PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094442.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 546aa MW: 56775.8 Da PI: 8.9553

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027094442.1 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MNNSSAMATV PSASEEASVS SAGNPMIAAQ VGPVKKRRNL PGMPDPDAEV IALSPKTLLA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRNGKEV KKRVYVCPEA TCIHHDPSRA 120 LGDLTGIKKH FCRKHGEKKW KCERCSKKYA VISDWKAHTK TCGTREYRCD CGTLFSRRDS 180 FITHRAFCDA LAQESARSQT QTLAITNEEG TLKVQAQTTT TRTSSSSPPP PPLTPSTGVL 240 SPVLSIHSSE MPENLIGRSQ PQPGTPQLSA TSTTSAAAAT AGNSSSPSDA NVSSTTGVFA 300 SILGASGSAG LSRSSQSPSS FSGLLCAMGG PERSAVEPIS LSLSSSLYLS NHPSTLFPST 360 PQDHHPRHYS TNPQPALSAT ALLQKAAQIG AASSGSSFLR GLGLAMPSSS DLQDTCASPS 420 TATAPATASA SASTANWMMS HVKPENGSVA PGQLGLGLAS DHAASGLTDL MMGPPTIFGG 480 KPTTLDFLGL GMAPGAPSSD GISAYLSSMR GGGLDVAAVA ATSTFGGINL GGSGWDDSSD 540 RKPTLL

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MNNSSAMATV PSASEEASVS SAGNPMIAAQ VGPVKKRRNL PGMPDPDAEV IALSPKTLLA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRNGKEV KKRVYVCPEA TCIHHDPSRA  120
LGDLTGIKKH FCRKHGEKKW KCERCSKKYA VISDWKAHTK TCGTREYRCD CGTLFSRRDS  180
FITHRAFCDA LAQESARSQT QTLAITNEEG TLKVQAQTTT TRTSSSSPPP PPLTPSTGVL  240
SPVLSIHSSE MPENLIGRSQ PQPGTPQLSA TSTTSAAAAT AGNSSSPSDA NVSSTTGVFA  300
SILGASGSAG LSRSSQSPSS FSGLLCAMGG PERSAVEPIS LSLSSSLYLS NHPSTLFPST  360
PQDHHPRHYS TNPQPALSAT ALLQKAAQIG AASSGSSFLR GLGLAMPSSS DLQDTCASPS  420
TATAPATASA SASTANWMMS HVKPENGSVA PGQLGLGLAS DHAASGLTDL MMGPPTIFGG  480
KPTTLDFLGL GMAPGAPSSD GISAYLSSMR GGGLDVAAVA ATSTFGGINL GGSGWDDSSD  540
RKPTLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-113	C2H2 family protein