PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094344.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 353aa MW: 37916 Da PI: 9.9335

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.6	3.8e-20	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + XP_027094344.1 14 KGPWSPEEDELLQRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 59 79****************************.*********985 PP
2	Myb_DNA-binding	55.1	1.7e-17	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ede++++a++++G++ W+tIar + gRt++ +k++w++ XP_027094344.1 68 AFTADEDEKIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGTIAHRKES DRIKGPWSPE EDELLQRLVE KHGPRNWSLI SKSIPGRSGK SCRLRWCNQL 60 SPQVEHRAFT ADEDEKIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRRCSSMSD 120 DFNFEVPQQP LKRSASVGPG TNVSAIYVNP SSPSGSDLSD SSLSGFGSGH VFRPLALTGG 180 ISPPVQQIET LSSAAPDPPT SLTLSLPGSS SAKSPTQNSK SVDDPTPSLG AAGQTVQQPT 240 QVMVRPPPPP PPPSPPPPLA PAPPTPMAPP QAAPVAPPQS QGGFVYPVPA PAPMPGQVAE 300 RQFFSPEFLG VLQEMIRKEV RSYMSGIEQN GMCMQTEAIR NAVVKRIGIS KID

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGTIAHRKES DRIKGPWSPE EDELLQRLVE KHGPRNWSLI SKSIPGRSGK SCRLRWCNQL  60
SPQVEHRAFT ADEDEKIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRRCSSMSD  120
DFNFEVPQQP LKRSASVGPG TNVSAIYVNP SSPSGSDLSD SSLSGFGSGH VFRPLALTGG  180
ISPPVQQIET LSSAAPDPPT SLTLSLPGSS SAKSPTQNSK SVDDPTPSLG AAGQTVQQPT  240
QVMVRPPPPP PPPSPPPPLA PAPPTPMAPP QAAPVAPPQS QGGFVYPVPA PAPMPGQVAE  300
RQFFSPEFLG VLQEMIRKEV RSYMSGIEQN GMCMQTEAIR NAVVKRIGIS KID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-72	MYB family protein