PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027093163.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 950aa    MW: 104756 Da    PI: 5.4349
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027093163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.3e-24147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv  ++L++gD+v+F   ++++
  XP_027093163.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGTKRLRAGDSVLFI--RDEK 238
                     99*********************999*****9555554.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r+
  XP_027093163.1 239 SQLLLGVRRA 248
                     7789999997 PP
2Auxin_resp117.11.5e-38273356183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv+++++++k+++ +++s+GmRf m+fete+ss+rr++Gt+vg+sdldp+rWp+SkWrsL+
  XP_027093163.1 273 AAHAAANRSPFTIFYNPRACPSEFVIPLARYRKSVYgTQLSAGMRFGMMFETEESSKRRYMGTIVGISDLDPLRWPGSKWRSLQ 356
                     79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    
MGAVEEKIKG GALVPGVQNS LLEEMKLLKE MQDQSGIRKP INSELWHACA GPLVMLPQVG  60
SLVYYFPQGH SEQVSVSTNR TATSQIPNYP NLPSQLLCQV HNVTQHADKD TDEIYAQMSL  120
QPVNSDKDIF PMPDFGIKPS KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPQLDYSM  180
QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSMFV GTKRLRAGDS VLFIRDEKSQ  240
LLLGVRRANR QQAALPSSVL SADSMHIGVL AAAAHAAANR SPFTIFYNPR ACPSEFVIPL  300
ARYRKSVYGT QLSAGMRFGM MFETEESSKR RYMGTIVGIS DLDPLRWPGS KWRSLQVEWD  360
EPGCGDKQNR VSPWEIETPE SLFIFPSLTA GLKRPFQSAF LGAQTEWESL VNKPFLRVPG  420
NLSGDIVCPS VSNPWSEQLM KMLIRPNCVD NLPSTASSLL EANAKVSPVL EAEKITQAVI  480
KQKAEIIPRE HVSSQSESIQ QSHLDQANNS KLNFSSQSVL PGKPQHLDKL GNQTPSVIHT  540
EATKLEPELQ SDQLSQYSSL GHCNDDRLVV KPANSHNLVN DIVLLNQNNN MLAVQASPKM  600
MQAQLDSHLL QSLPSDASQE ENSIANGLFV YPDHNEWNLY PSSCQSLAGL LKPPGSSSAA  660
IRKHDQPVIL SGGLGPELST IEELWNNQFN NTKFLSQTNP LVALPQHDLP NLHLLASSFG  720
LKDLSNESSN QSDMYSCLNF DGNNSGSTVV DPSVSSTALD EFCTLKNSNF QSPSDYLMGN  780
FNSCQDVQSQ ITSTSLADSQ AFSVQEFVDN SGGTSSSDVD FDESNALPNS SWQQTTPRVR  840
TYTKIQKAGS VGRSIDVSSF KNYDELCSAI ERMFGLKGLL NDSKGSGWKL VYVDFENDVL  900
LVGDDPWEEF VGCVKCIRIL SPSEVQQMGE EGMQLLNSVS EAGRSCDGLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein