PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027092758.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 429aa MW: 46216.4 Da PI: 6.3761

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027092758.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	271	319	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq XP_027092758.1 271 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MSSTENTTGN MGFQESGGGG DSILNCPSSG MDTNSMSDKV AGMAMCSESM FKSSTRVDPF 60 YGGTGWDPLV SLNHAENFGG SSVVPHHNEF GNSHYPVGLE NQAISSTSHL VHYASDSGLG 120 DMVPKLACFG SGAFSEMVNS FGLPDCGQVT ETSFHQKYAQ KMGVGAQEDC QISEERALGG 180 NGKKKRKASD FQSPLNPKKN IEGEQQKDLS ANSSECSKEQ DEMKQKMEQS NSTNLRGKQA 240 SGKQIKDNSN SGEPAKDTYI HVRAKRGQAT NSHSLAERVR RERISERMRL LQELVPGCNK 300 ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNVDL DRIFQKDILH SRGSSAATLG 360 IGPGLNSSHP FPGYPQGSFP GISGAAAPFH PVPQAVWDNE LQSILQMGFD SSPSINNLGP 420 NAGRSKLEL

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MSSTENTTGN MGFQESGGGG DSILNCPSSG MDTNSMSDKV AGMAMCSESM FKSSTRVDPF  60
YGGTGWDPLV SLNHAENFGG SSVVPHHNEF GNSHYPVGLE NQAISSTSHL VHYASDSGLG  120
DMVPKLACFG SGAFSEMVNS FGLPDCGQVT ETSFHQKYAQ KMGVGAQEDC QISEERALGG  180
NGKKKRKASD FQSPLNPKKN IEGEQQKDLS ANSSECSKEQ DEMKQKMEQS NSTNLRGKQA  240
SGKQIKDNSN SGEPAKDTYI HVRAKRGQAT NSHSLAERVR RERISERMRL LQELVPGCNK  300
ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNVDL DRIFQKDILH SRGSSAATLG  360
IGPGLNSSHP FPGYPQGSFP GISGAAAPFH PVPQAVWDNE LQSILQMGFD SSPSINNLGP  420
NAGRSKLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-72	bHLH family protein