PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027091744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 543aa MW: 56385.4 Da PI: 9.0819 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027091744.1 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence |
MNNSSAMATA PSASEEASVS SAGNPMIAAQ VGPVKKKRNL PGMPDPDAEV IALSPKTLLA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRNGKEV KKRVYVCPEA TCIHHDPSRA 120 LGDLTGIKKH FCRKHGEKKW KCERCSKKYA VISDWKAHTK TCGTREYRCD CGTLFSRRDS 180 FITHRAFCDA LAQESARSQT QTLAITNEEG TLKVQAQTTT TRTSSSSPPP PPLTPSTGVL 240 SPVLSIHSSE MPENLIGRSQ PQPGTPQLSA TSTTSAAAAT AGNSSDANVS STTGVFASIL 300 GASGSAGLSR SSQSPSSFSG LLCAMGGPGR SAVEPISLSL SSSLYLSNHP STLFPSTPQD 360 HHPRHYSTNP QPALSATALL QKAAQIGAAS SGSSFLRGLG LAMPSSSDLQ DNCASPSPAT 420 APATASASAS TANWMMSHVK PENGSVAPGQ LGLGLASDHA ASGLTDLMMG PPTIFGGKPT 480 TLDFLGLGMA PGAPSSDGIS AYLSSMRGGG LDVAAVAATS TFGGINLGGS GWDDSSDRKP 540 TLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-113 | C2H2 family protein |