PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090961.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 512aa    MW: 56376.6 Da    PI: 6.0937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.67.4e-1021225061374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar...svselykalppsetsekn..........sseela 79 
                     lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +      ++y +    + s ++          ++++la
  XP_027090961.1 122 LVHLLMAAAEALTGVNKSreLARVILVRLKELVSPNDgSNMERLAAYFTEALHGLLEGaggAAAGVYGK----HFSGHHgphvkddhhhQTDVLA 212
                     68***********85554449***********8887669*****************9832223334322....2211112222234455999*** PP

            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAee 171
                     a++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gp  +lRiT++++  s   s ++++etg+rL+ fA++
  XP_027090961.1 213 AFQLLQDMSPYVKFGHFTANQAILEAVVHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPStHLRITALSRGGSArrSFTTIQETGRRLSAFAAS 307
                     *********************************************************66555*********77778899**************** PP

            GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyys 265
                     +g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +    ++ + ++L+  k+l+P+++++ve+e+    +e F+ +f+++l++ys
  XP_027090961.1 308 IGQPFSFHQCRLDSDEAFRPSSLKLVRGEALIINCMLHLPHFSYR---ASESIASFLSGAKTLNPRLITLVEEEVGPiANEGFVGKFIDSLHHYS 399
                     *********9999**************************999733...3333568*******************9988***************** PP

            GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359
                     a++dslea++p + ++r+ vEr++lg++i   +a   ++  + + + ++W erl ++GF+p+++s  + +qakll+  ++ dgyrvee   + lv
  XP_027090961.1 400 AIYDSLEAGFPLQGRARVLVERVFLGPRIAGSIARIYRA--QGEAEGGSWGERLASMGFRPISVSFANHCQAKLLVGLFN-DGYRVEELaCNKLV 491
                     ***********************************9998..556668*********************************.******98479999 PP

            GRAS 360 lgWkdrpLvsvSaWr 374
                     lgWk+r+L+s+S+W+
  XP_027090961.1 492 LGWKSRRLLSASVWT 506
                     **************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MAVVFRNTMM DVDFPCYSTT TTTTATTTAT TTTTTTATSS DDNCCDWNDW SSVVDWDEIS  60
CDGDHMKDDG FHDLLETMTD EIVTVHHPAW ALPDRRSSTV SPETVMMDSE DDGGEDFKGL  120
RLVHLLMAAA EALTGVNKSR ELARVILVRL KELVSPNDGS NMERLAAYFT EALHGLLEGA  180
GGAAAGVYGK HFSGHHGPHV KDDHHHQTDV LAAFQLLQDM SPYVKFGHFT ANQAILEAVV  240
HDRRVHIVDY DIMEGIQWAS LMQALVSRKD GPSTHLRITA LSRGGSARRS FTTIQETGRR  300
LSAFAASIGQ PFSFHQCRLD SDEAFRPSSL KLVRGEALII NCMLHLPHFS YRASESIASF  360
LSGAKTLNPR LITLVEEEVG PIANEGFVGK FIDSLHHYSA IYDSLEAGFP LQGRARVLVE  420
RVFLGPRIAG SIARIYRAQG EAEGGSWGER LASMGFRPIS VSFANHCQAK LLVGLFNDGY  480
RVEELACNKL VLGWKSRRLL SASVWTSPDN DM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-160GRAS family protein