PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027090148.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 281aa    MW: 31603.8 Da    PI: 9.6296
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027090148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.9e-07120139120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+k+F+r  nL+ H+
  XP_027090148.1 120 FSCHICSKTFNRYNNLQMHM 139
                     89*****************9 PP
2zf-C2H210.80.0015204226123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgk+   k + ++H +++
  XP_027090148.1 204 FSCRKCGKCLAVKGDWRTHEKNC 226
                     89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MENSNSSMSF TSSLSLFASS SSTADHKIIQ HFNFFPERKS QSSQESQKSS ALEKNPSSFG  60
DEKEDVTIAL HIGPPSTCTR IASLSLNDYE KGVENLATGF SPAPYWIPTR AQILVGFTHF  120
SCHICSKTFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPKA MLGIPCYCCE EGCKNNINHP  180
RARPLKDFRT LQTHYKRKHG TKRFSCRKCG KCLAVKGDWR THEKNCGKRW HCMCGSDFKH  240
KRSLKDHITS FGSGHGPSPS PPPSIDAIDL HESTRTRSLF V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.16e-97C2H2 family protein