PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089994.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 428aa MW: 46152.4 Da PI: 6.2395

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	271	319	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq XP_027089994.1 271 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MSSTENTTGD MGFQESGGGG DSILNCPSSG MDTNSMSDKV AGMAMCSESM FKSSTGVDPF 60 YGGTGWDPLV SLNHAENFGG SPVIPHHNEF GNSHYPVGLE NQAISNTSHL VHYASDSGLG 120 DMVPKLSCFG SGAFSEMVNS FGLPDCGQVT ETSFHQKYAK KKGVGAQEDC QISEERALGG 180 NGKKKRKASD FQSPLNPKKN IEGEQQKDLS ANSSECSKEQ DEMKQKMEQS NSTNLRGKQA 240 SGKQIKDNSD SGEPPKDTYI HVRAKRGQAT NSHSLAERVR RERISERMRL LQELVPGCNK 300 ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNVDL DRIFQKDILH SRGSSAATLG 360 IGPGLNSSHP FPGYPQGSFP GISGAAAPFH PVPQAVWDNE LQSILQMGFD TSPSINNLGP 420 NGRSKLEL

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MSSTENTTGD MGFQESGGGG DSILNCPSSG MDTNSMSDKV AGMAMCSESM FKSSTGVDPF  60
YGGTGWDPLV SLNHAENFGG SPVIPHHNEF GNSHYPVGLE NQAISNTSHL VHYASDSGLG  120
DMVPKLSCFG SGAFSEMVNS FGLPDCGQVT ETSFHQKYAK KKGVGAQEDC QISEERALGG  180
NGKKKRKASD FQSPLNPKKN IEGEQQKDLS ANSSECSKEQ DEMKQKMEQS NSTNLRGKQA  240
SGKQIKDNSD SGEPPKDTYI HVRAKRGQAT NSHSLAERVR RERISERMRL LQELVPGCNK  300
ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELNVDL DRIFQKDILH SRGSSAATLG  360
IGPGLNSSHP FPGYPQGSFP GISGAAAPFH PVPQAVWDNE LQSILQMGFD TSPSINNLGP  420
NGRSKLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-73	bHLH family protein