PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089604.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 681aa MW: 79015.2 Da PI: 6.8108

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.2e-22	70	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s++ g ++kr+fvC++ g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel XP_027089604.1 70 DYYGNFARKSGFSIRKERSRLSQQLG-VYKRDFVCYRAGFAPARKKPTGEHQRDRKSARCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 161 59******************8888.***************************************99867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MVSIPSKNIW MRRQQCPCGD WKCFLAYEGE AEDTIISPES AVKNVDFGSS EAMVAPYVGM 60 VFKNDNDAFD YYGNFARKSG FSIRKERSRL SQQLGVYKRD FVCYRAGFAP ARKKPTGEHQ 120 RDRKSARCGC DAKMYLSKEV VDGVSQWFVV QFSNVHNHEL LEDDQVRLLP AYRKIHEADQ 180 ERILLLSKAG FPIHRIVKVL ELEKGIQGGQ LPFLERDVRN FVQNRKKLVQ ETDALLNEKR 240 ENDTMDLLEA CRVTKESDAY FVYDVTVDEN DKVENIAWSY GDSIHAYNMF GDVVYFDTTY 300 RSMTYGMLFG AWLGINNHGK IIFFGCALLQ DETPRSFAWA LQAFCRFVKG RYPQTIITDI 360 DLGLRDAIRS ELPNTRHIIS IWNILPKVFS WFSLLLGPRY SELKSELEVL YHVESTEEFE 420 YQWSQMVSRF GLNSDRHISL IFSLRLFWAL SYIRGCFLAQ MASISYSKSV DTFFKGIFSA 480 QTCLRSFFEQ VGILSNYKAQ AAHEDLQYMQ LRTCLPLEQH ARNILTPFAF NALQQELILS 540 MQYAASEMAN GSYLVRHFKK MDGEYLVIWI PEDEQIHCSC KEFESSGILC RHALRVLVVK 600 NYFELPDKYC LSRWRQGNSL VSYGEHGNQI GIDKWFQEFN CLTETLFSEA SLAKERSDYV 660 RKEITKELTR LINEVRDMPC N

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MVSIPSKNIW MRRQQCPCGD WKCFLAYEGE AEDTIISPES AVKNVDFGSS EAMVAPYVGM  60
VFKNDNDAFD YYGNFARKSG FSIRKERSRL SQQLGVYKRD FVCYRAGFAP ARKKPTGEHQ  120
RDRKSARCGC DAKMYLSKEV VDGVSQWFVV QFSNVHNHEL LEDDQVRLLP AYRKIHEADQ  180
ERILLLSKAG FPIHRIVKVL ELEKGIQGGQ LPFLERDVRN FVQNRKKLVQ ETDALLNEKR  240
ENDTMDLLEA CRVTKESDAY FVYDVTVDEN DKVENIAWSY GDSIHAYNMF GDVVYFDTTY  300
RSMTYGMLFG AWLGINNHGK IIFFGCALLQ DETPRSFAWA LQAFCRFVKG RYPQTIITDI  360
DLGLRDAIRS ELPNTRHIIS IWNILPKVFS WFSLLLGPRY SELKSELEVL YHVESTEEFE  420
YQWSQMVSRF GLNSDRHISL IFSLRLFWAL SYIRGCFLAQ MASISYSKSV DTFFKGIFSA  480
QTCLRSFFEQ VGILSNYKAQ AAHEDLQYMQ LRTCLPLEQH ARNILTPFAF NALQQELILS  540
MQYAASEMAN GSYLVRHFKK MDGEYLVIWI PEDEQIHCSC KEFESSGILC RHALRVLVVK  600
NYFELPDKYC LSRWRQGNSL VSYGEHGNQI GIDKWFQEFN CLTETLFSEA SLAKERSDYV  660
RKEITKELTR LINEVRDMPC N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein