PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027089367.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24784.4 Da PI: 6.9451 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.3 | 5.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELSvLCdaeva+i+fs++gkl+e+ss XP_027089367.1 9 KRIENSTSRQVTFSKRRKGLLKKAFELSVLCDAEVALIVFSPSGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 68.2 | 2.8e-23 | 91 | 182 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++ + ++e+a L+k+ie L++++R++lG++L+s s+ eL+q+e+qLeksl+ iRs+K + +e+i++l++ ek l++en +Lr+k+ee XP_027089367.1 91 ETDLHTPHFEEEVAILRKKIELLEETKRKFLGDGLDSSSIDELEQIEHQLEKSLRIIRSRKILFSCEEINQLKEEEKILRRENAELREKYEE 182 4566788999*******************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MVRGKTQIKR IENSTSRQVT FSKRRKGLLK KAFELSVLCD AEVALIVFSP SGKLFEFSSS 60 SAASTTERYR KCIKNLLRPS KQMDVEHLQS ETDLHTPHFE EEVAILRKKI ELLEETKRKF 120 LGDGLDSSSI DELEQIEHQL EKSLRIIRSR KILFSCEEIN QLKEEEKILR RENAELREKY 180 EERQLELSIG QQFLSLEQGK EVETQLFIGL PDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-59 | MIKC_MADS family protein |