PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027089275.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 239aa    MW: 26529.8 Da    PI: 7.3906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027089275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00031872231354
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R+r+++    Lr ++P a       ++ +++L +Av+Y+ksL
  XP_027089275.1 187 RQRMRKMVKALRGIVPGA-----HQMDTVAVLDEAVRYLKSL 223
                     899999999********8.....58***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MQKNQQLFPR KPFLSPANEA GGYMLSAPIS SVFGETICPP GATGLWPLHD VEFRPSETCP  60
RNFIIFDQTD NRSQIMLHPA TGSRFCYPGS NTWAAPSEYK AVKFADNEHR EVTSLKEDSD  120
DINALLSSDD EHEECDDDEL STARANVYCG SNSPDSCSNY DSPPRKTRIT SSRKTSGDVS  180
SCTGRKRQRM RKMVKALRGI VPGAHQMDTV AVLDEAVRYL KSLKVEVQKL GVGKLKSYT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185191RKRQRMR
2186191KRQRMR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.12e-26bHLH family protein