PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088465.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 482aa MW: 53190.6 Da PI: 10.1645

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088465.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.7	4.2e-13	36	109	18	96
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkv 96 +p +f+++++++ + t +l+d+sgrsW+vk+ r+ ++++vl++GW++F + L + f++F++ g+ +f v + XP_027088465.1 36 IPTHFLSKIEEE--VPDTAILRDSSGRSWSVKV--RQERNGIVLADGWENFSVHHSLVpSASFLLFRYCGNWCF--EVDI 109 99**999744..5669***********..*******************888999*9998888..5554 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
LWESFVFKLA VCNLGGSLDT KITLCYIFFG LQFHEIPTHF LSKIEEEVPD TAILRDSSGR 60 SWSVKVRQER NGIVLADGWE NFSVHHSLVP SASFLLFRYC GNWCFEVDIF ACSGLEKEIV 120 DASGNSEASP SGVKSKKDGR GKRTVRSVKD NLPKSYVPGP RSLSLKNKKD RRGKRSVGSA 180 KDHLPKYCVS GPVDIFGDSG LEKEIVSAGG NNEAGSSGVK NKKGGRGTRS VGSVKDHLPK 240 SCVPGPLSLD LKNKKDRRGK RSVGSAKDHL PKYCVSGPDF FGDSGLEKEI VSAGGNNKAG 300 PSGVKNKKGG GGTRSVGSMK EHLPKSRVPG PGVPYRTRIA WNPERLGLYL DSCLEEAAKG 360 RRRSGNLTPE SWQKVQSVFK EKTNIDLTPT QLSNFWSVLR KRYMVWSKII AEAGNGGYDP 420 VANKINWNQK QWEEYIKVNP VAKRFRKKKL EYPEKMKLLF GCYTAVHEDG GVSSDEMYYS 480 SI

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

LWESFVFKLA VCNLGGSLDT KITLCYIFFG LQFHEIPTHF LSKIEEEVPD TAILRDSSGR  60
SWSVKVRQER NGIVLADGWE NFSVHHSLVP SASFLLFRYC GNWCFEVDIF ACSGLEKEIV  120
DASGNSEASP SGVKSKKDGR GKRTVRSVKD NLPKSYVPGP RSLSLKNKKD RRGKRSVGSA  180
KDHLPKYCVS GPVDIFGDSG LEKEIVSAGG NNEAGSSGVK NKKGGRGTRS VGSVKDHLPK  240
SCVPGPLSLD LKNKKDRRGK RSVGSAKDHL PKYCVSGPDF FGDSGLEKEI VSAGGNNKAG  300
PSGVKNKKGG GGTRSVGSMK EHLPKSRVPG PGVPYRTRIA WNPERLGLYL DSCLEEAAKG  360
RRRSGNLTPE SWQKVQSVFK EKTNIDLTPT QLSNFWSVLR KRYMVWSKII AEAGNGGYDP  420
VANKINWNQK QWEEYIKVNP VAKRFRKKKL EYPEKMKLLF GCYTAVHEDG GVSSDEMYYS  480
SI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-09	B3 family protein