PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085838.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 487aa MW: 53014.6 Da PI: 5.3794

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.2e-31	250	308	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ XP_027085838.1 250 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 308 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MCSRLLQKME NYQGDLADIL RASGGRSIAS SNISSAEVSV SAPRDWQFPS NQVGIYEEPS 60 LDEFGDPFTN MRDPLLLPDM DHMPASGFYD ASSTDHIITS GTTAAAENTG GFSCSDVGGG 120 GGGVGGCNNS SSLLTQRILD DHELSRRPPN NIFTRMLQIS PNAKPPSSPR ESQLLVAASP 180 RGLKPPTLVT NDMINTSNNS KVSVIENAPV QISSPRNTGI KRRKSQAKKV VCIPAPAPAN 240 SRPSGEIVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT 300 YTSEHNHPWP TQRNALAGST RSQPTKSGST SKATNSSHAQ KATNLKEEEK PETQTDNASS 360 PIVTGSSSTG QVVKEETEME MEVEGLDKKK EMDNLDQFNE GFPQSYKPGL PDSNHSEDFF 420 ADLSELEADP LNLLFTQGYS GDEERENKNL ELFSFYDWTT NNSSMTTTTI MTTTTITSSL 480 EEAKKGS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MCSRLLQKME NYQGDLADIL RASGGRSIAS SNISSAEVSV SAPRDWQFPS NQVGIYEEPS  60
LDEFGDPFTN MRDPLLLPDM DHMPASGFYD ASSTDHIITS GTTAAAENTG GFSCSDVGGG  120
GGGVGGCNNS SSLLTQRILD DHELSRRPPN NIFTRMLQIS PNAKPPSSPR ESQLLVAASP  180
RGLKPPTLVT NDMINTSNNS KVSVIENAPV QISSPRNTGI KRRKSQAKKV VCIPAPAPAN  240
SRPSGEIVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT  300
YTSEHNHPWP TQRNALAGST RSQPTKSGST SKATNSSHAQ KATNLKEEEK PETQTDNASS  360
PIVTGSSSTG QVVKEETEME MEVEGLDKKK EMDNLDQFNE GFPQSYKPGL PDSNHSEDFF  420
ADLSELEADP LNLLFTQGYS GDEERENKNL ELFSFYDWTT NNSSMTTTTI MTTTTITSSL  480
EEAKKGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	9e-81	WRKY family protein