PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085527.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 821aa    MW: 90471.2 Da    PI: 5.0197
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2090145156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_027085527.1  90 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 145
                     688899***********************************************998 PP
2START147.31.4e-462905142206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     la +  +el+k+ +a ep+W + s    e +n de+++ f+  +v         ++ea r  +vv+m++ +lv  +ld + +W e ++    +a+
  XP_027085527.1 290 LAISSVEELMKMCQACEPLWLRTSdgskEVLNVDEYRRLFQW-GVdlkqnptqVRTEATRHNAVVIMNSITLVDAFLDAN-KWMELFPsivsRAK 382
                     6778899*****************99999999******9954.34688889999**************************.************** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     tl+v++sg      g lqlm+aelq++splvp R++ f+Ry+ q  ++g+w+ivd  +d+ ++   + ++ +  ++pSg++i++++ng+s+vtwv
  XP_027085527.1 383 TLQVVTSGvsghasGSLQLMYAELQVPSPLVPtRESHFLRYCHQnAEGGTWAIVDFPLDNFNNSYPTIPYYK--RRPSGCIIQDMPNGYSRVTWV 475
                     *******************************************************99998777655777777..9******************** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ehv+ ++    + +++lv+sg ++gak+w++ lqrqce+
  XP_027085527.1 476 EHVEIDSTPLNQTINHLVSSGNVFGAKRWLSVLQRQCER 514
                     *******999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    
MFGDCQILSS MGGNGVPSDS YYPSSIQNPS FSFMTNLPFN IFPPALIPKE ENGMSRSKEE  60
ILESGSGSEH VEGGVSGNEQ EAEQQQPTKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL  120
KLSQDLGLKP RQVKFWFQNR RTQMKAQQDR ADNVILRAEN ESLKNENYRL QAALRNVVCP  180
NCGGPAVLGE MGFDEQAVRL ENARLKEELM QYDRVCALLS QYGGRAIPEI GTSSLLAPSL  240
DLDINMLPRK FEEPIGDCPG MLSMPFIPEN PNFSGGVLIL DEEKSIAMEL AISSVEELMK  300
MCQACEPLWL RTSDGSKEVL NVDEYRRLFQ WGVDLKQNPT QVRTEATRHN AVVIMNSITL  360
VDAFLDANKW MELFPSIVSR AKTLQVVTSG VSGHASGSLQ LMYAELQVPS PLVPTRESHF  420
LRYCHQNAEG GTWAIVDFPL DNFNNSYPTI PYYKRRPSGC IIQDMPNGYS RVTWVEHVEI  480
DSTPLNQTIN HLVSSGNVFG AKRWLSVLQR QCERIASLMA RNISDLGVIP SPEARKNVMY  540
LSQRMIRTFC MNISNACGQS WTALSDSAED TVRIATRKVS GPGEPNGLIL TAVSTTWLPY  600
PHYQVFDLLR DERRRSQLDV LSNGNALQEV AHIANGSHPG NCVSLLRINV ASNSSQKVEL  660
MLQESCTDDS GSLIVYTTVD VDSIQLAMNG EDPECIPLLP VGFVIHPLEN GSSSHDGSSL  720
DNDQTSENGN NLPADLSGCL LTVGLQVLAS TIPTAKLNLS SVTAINQHIC NTVQQISAAL  780
GNHGSNIGTT SSNDNDNIII ASLGEPSAPA PPVQPDQVST P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein