PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083310.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 220aa    MW: 24508.3 Da    PI: 5.6479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1856109156
             AP2   1 sgykGVrwdkkrgr..WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     + y+G+r+++ +++  Wv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+++l+g+
  XP_027083310.1  56 PVYRGIRRRR-WNSnkWVCELREP---NKQSRIWLGTYPTAEMAARAYDVAALALRGH 109
                     68****9777.88888*******8...336**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MDASSSCSDP HPFGSLSDVS PTTAQRAINS DEEIILSSSR PKKRAGRKKF KETRHPVYRG  60
IRRRRWNSNK WVCELREPNK QSRIWLGTYP TAEMAARAYD VAALALRGHL ACLNFADSVW  120
RLPVPESRDA KDIRKAAAEA AEMFRSQEEC DNTNSEASAS GSGSDTSSMF MDDEALFDVH  180
GLMAHMAEGL LLSPPHCLGD GYSFDDVEND AEVPLWSYTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14765RKKFKETRHPVYRGIRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-47ERF family protein