PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082997.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CPP

Protein Properties

Length: 962aa MW: 103328 Da PI: 6.5562

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.8	2.8e-15	549	587	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C+e C C++C+N+ e XP_027082997.1 549 CKRCNCKKTKCLKLYCDCFAAGIYCAEPCACQGCFNRPE 587 79**********************************876 PP
2	TCR	48.9	1.3e-15	636	674	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce C+N XP_027082997.1 636 RHKRGCNCKKSKCLKKYCECYQANVGCSDGCRCEACENV 674 589***********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence
MDSSPEQPSK PNNSTHSPPL PIPPHQVQES PVFSYISNLS PIKPDKAALG SQGFPGINSP 60 PLVFRSPHIN PKSQPSFLKR PQSAGSSDAG LSEQNESCKD TLTVAEESRV SSCHLSSRLI 120 SCPQKEFIDD SKPEKASSPP VCGNDYLTDI VNMDGGDSDS SANLTPKSSD DVSQSQHELL 180 DSKESAENTE DKDDTRREEM KMGAASVTLE QAEEYNLKDS PSDLKSVVPD QNSGDGNGPP 240 DLHPRVEPDK SVGHALENQS GGRSMAENAG SGHVFEVGCN LLSESLQVAQ DCGRSLENTG 300 VQCTESLENK VHGHCAQIVQ HQHGISRRCL QFEDTQGKII PNSGYQISSG SVGYPRSPAS 360 PAGSEVLESA SLNRPASPSN RLLANMTPPF FSPQTSGNYN SKLPKRSGIG LHLNSIVNSM 420 QMGSGAKVSM RSAERGSFNG LGKKSMSITG SSLRHNFSTS ANVEGVPISD ESRHNEHASD 480 AANSASTLSP CSMKPLYEPV VLKPIELQPN SSNKRMCTSE TSDSFVDFGQ SSPKKKRKKT 540 LDAGDGSGCK RCNCKKTKCL KLYCDCFAAG IYCAEPCACQ GCFNRPEYED TVLETRQQIE 600 SRNPLAFAPK IIQHLTEPPT NVCAEDGSHF TPSSARHKRG CNCKKSKCLK KYCECYQANV 660 GCSDGCRCEA CENVYGQKGE FGMIKDLISK HGEKLDSSFG TTLESVASKD GLLHNELYNP 720 HSLTPLTPAF QCSDHGKGAP KAWLSSGGYL QSPESCLTYL APYGMSPGQA GNPDTHNMII 780 EANTGIMDLV SFGQGIGYGN EHTVNQLSPR CEVPRNDGRL AALPDPQDWE NTSRAQTYAN 840 HQVSSANSLR WRRSSTHFDG NKPDEAADFD GGLYSILDDD TPEILKEIPM PPNAIKVSSP 900 NKKRVSPPHG QGAELGSSSS AGLRTGRKFI LQAVPSFPPL TPCIDSKGAT GMNNSQKSSS 960 GK

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence

MDSSPEQPSK PNNSTHSPPL PIPPHQVQES PVFSYISNLS PIKPDKAALG SQGFPGINSP  60
PLVFRSPHIN PKSQPSFLKR PQSAGSSDAG LSEQNESCKD TLTVAEESRV SSCHLSSRLI  120
SCPQKEFIDD SKPEKASSPP VCGNDYLTDI VNMDGGDSDS SANLTPKSSD DVSQSQHELL  180
DSKESAENTE DKDDTRREEM KMGAASVTLE QAEEYNLKDS PSDLKSVVPD QNSGDGNGPP  240
DLHPRVEPDK SVGHALENQS GGRSMAENAG SGHVFEVGCN LLSESLQVAQ DCGRSLENTG  300
VQCTESLENK VHGHCAQIVQ HQHGISRRCL QFEDTQGKII PNSGYQISSG SVGYPRSPAS  360
PAGSEVLESA SLNRPASPSN RLLANMTPPF FSPQTSGNYN SKLPKRSGIG LHLNSIVNSM  420
QMGSGAKVSM RSAERGSFNG LGKKSMSITG SSLRHNFSTS ANVEGVPISD ESRHNEHASD  480
AANSASTLSP CSMKPLYEPV VLKPIELQPN SSNKRMCTSE TSDSFVDFGQ SSPKKKRKKT  540
LDAGDGSGCK RCNCKKTKCL KLYCDCFAAG IYCAEPCACQ GCFNRPEYED TVLETRQQIE  600
SRNPLAFAPK IIQHLTEPPT NVCAEDGSHF TPSSARHKRG CNCKKSKCLK KYCECYQANV  660
GCSDGCRCEA CENVYGQKGE FGMIKDLISK HGEKLDSSFG TTLESVASKD GLLHNELYNP  720
HSLTPLTPAF QCSDHGKGAP KAWLSSGGYL QSPESCLTYL APYGMSPGQA GNPDTHNMII  780
EANTGIMDLV SFGQGIGYGN EHTVNQLSPR CEVPRNDGRL AALPDPQDWE NTSRAQTYAN  840
HQVSSANSLR WRRSSTHFDG NKPDEAADFD GGLYSILDDD TPEILKEIPM PPNAIKVSSP  900
NKKRVSPPHG QGAELGSSSS AGLRTGRKFI LQAVPSFPPL TPCIDSKGAT GMNNSQKSSS  960
GK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	535	539	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-62	CPP family protein