PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082986.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 210aa MW: 23811.4 Da PI: 10.2966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	5.9e-11	41	92	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +r h +Er+RR+++ ++ Lr+l+P ++K s ++ +v+Y++++ XP_027082986.1 41 KRIIHRDVERQRRQEMAALYQSLRSLVPDeY---LQGKRSTSDHMHGTVKYVRHM 92 6888***********************77...9****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MARAPNANSC KPKSCTKKRK SSVAFGDNNV LDNESPVEHK KRIIHRDVER QRRQEMAALY 60 QSLRSLVPDE YLQGKRSTSD HMHGTVKYVR HMKRKVDELI SKRDELQELM KPGCSFSMLT 120 EFTVSLNKTS VRVQSSTTGM QIILKTTLRG GLPLSKFLSV LNGEGLSVIS CVSTNANEGQ 180 LHVMESEVDQ GRSFDQTKLQ KRLKELLYNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	20	PKSCTKKRK
2	41	53	KRIIHRDVERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-35	bHLH family protein