PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082970.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 673aa MW: 78131 Da PI: 7.2631

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.8e-23	60	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ +++ w++ ++el+HnH ++ XP_027082970.1 60 DFYNGYAKDQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSKSWRIVEVELQHNHLVS 144 6*******************999*************99888.....9********************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MEVVCLNSEP AFNEGDEYEH EGDCATGENA DELCAAPHLK RDPPPPTVGL EFDSFDEAYD 60 FYNGYAKDQG FGIRVSNSWF RSKRKERYRA KLSCSSAGFK KKSEANNPRP ETRTGCPAMI 120 VIKLVDSKSW RIVEVELQHN HLVSPEIKRF YKSHKKMILA AQKSQQAEPV KEIHTIKLYR 180 ASVINAAAPN GYSKVKERDV RHPTDHSKHL ELKEGDAHAV YNYFCRMKLT NPNFFYLMDL 240 DDEARLKNIF WADARSRSAY IYFSDAIAID TTCLTNKYEL PLVSFVGVNH HGQSVLLGCG 300 FLGHESVEYF VWMFRSWLTC MLGRHPRVIL TDQSKSLQMA ISEVFPGTRH CYCLSYIMQR 360 VPEKLGGLRG YEAIRKQLNQ AVYNSMKIAE FETAWGSMVG QHGLGENKWL QSLHEDRQRW 420 VPVYLKDTSF VGMIPVKENE VSKPFFDGYV HKHTSFKEFL DKYDLALQRK LMKEATGDTE 480 SRNCSFELRT KCNFELQLSK VYTKQIFEKF QIEVEGMYSC FNTRQVNING PIITFAVKER 540 VEVEESEKEV RQYEVLYETT NMEIRCICSL FNFRGYLCRH ALNVFNYNGV EEIPSQYILP 600 RWSKDYKRRF PLDPLPNDVD VNDYVLRYNH LLSRAIQVIE EGAQSRECWK ASLQGLEELC 660 RKFALENVDE VFL

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MEVVCLNSEP AFNEGDEYEH EGDCATGENA DELCAAPHLK RDPPPPTVGL EFDSFDEAYD  60
FYNGYAKDQG FGIRVSNSWF RSKRKERYRA KLSCSSAGFK KKSEANNPRP ETRTGCPAMI  120
VIKLVDSKSW RIVEVELQHN HLVSPEIKRF YKSHKKMILA AQKSQQAEPV KEIHTIKLYR  180
ASVINAAAPN GYSKVKERDV RHPTDHSKHL ELKEGDAHAV YNYFCRMKLT NPNFFYLMDL  240
DDEARLKNIF WADARSRSAY IYFSDAIAID TTCLTNKYEL PLVSFVGVNH HGQSVLLGCG  300
FLGHESVEYF VWMFRSWLTC MLGRHPRVIL TDQSKSLQMA ISEVFPGTRH CYCLSYIMQR  360
VPEKLGGLRG YEAIRKQLNQ AVYNSMKIAE FETAWGSMVG QHGLGENKWL QSLHEDRQRW  420
VPVYLKDTSF VGMIPVKENE VSKPFFDGYV HKHTSFKEFL DKYDLALQRK LMKEATGDTE  480
SRNCSFELRT KCNFELQLSK VYTKQIFEKF QIEVEGMYSC FNTRQVNING PIITFAVKER  540
VEVEESEKEV RQYEVLYETT NMEIRCICSL FNFRGYLCRH ALNVFNYNGV EEIPSQYILP  600
RWSKDYKRRF PLDPLPNDVD VNDYVLRYNH LLSRAIQVIE EGAQSRECWK ASLQGLEELC  660
RKFALENVDE VFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein