PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082969.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 688aa MW: 80077.4 Da PI: 7.3812

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	3.9e-23	75	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ +++ w++ ++el+HnH ++ XP_027082969.1 75 DFYNGYAKDQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSKSWRIVEVELQHNHLVS 159 6*******************999*************99888.....9********************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MLPLWQPLFF FSFYKMEVVC LNSEPAFNEG DEYEHEGDCA TGENADELCA APHLKRDPPP 60 PTVGLEFDSF DEAYDFYNGY AKDQGFGIRV SNSWFRSKRK ERYRAKLSCS SAGFKKKSEA 120 NNPRPETRTG CPAMIVIKLV DSKSWRIVEV ELQHNHLVSP EIKRFYKSHK KMILAAQKSQ 180 QAEPVKEIHT IKLYRASVIN AAAPNGYSKV KERDVRHPTD HSKHLELKEG DAHAVYNYFC 240 RMKLTNPNFF YLMDLDDEAR LKNIFWADAR SRSAYIYFSD AIAIDTTCLT NKYELPLVSF 300 VGVNHHGQSV LLGCGFLGHE SVEYFVWMFR SWLTCMLGRH PRVILTDQSK SLQMAISEVF 360 PGTRHCYCLS YIMQRVPEKL GGLRGYEAIR KQLNQAVYNS MKIAEFETAW GSMVGQHGLG 420 ENKWLQSLHE DRQRWVPVYL KDTSFVGMIP VKENEVSKPF FDGYVHKHTS FKEFLDKYDL 480 ALQRKLMKEA TGDTESRNCS FELRTKCNFE LQLSKVYTKQ IFEKFQIEVE GMYSCFNTRQ 540 VNINGPIITF AVKERVEVEE SEKEVRQYEV LYETTNMEIR CICSLFNFRG YLCRHALNVF 600 NYNGVEEIPS QYILPRWSKD YKRRFPLDPL PNDVDVNDYV LRYNHLLSRA IQVIEEGAQS 660 RECWKASLQG LEELCRKFAL ENVDEVFL

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MLPLWQPLFF FSFYKMEVVC LNSEPAFNEG DEYEHEGDCA TGENADELCA APHLKRDPPP  60
PTVGLEFDSF DEAYDFYNGY AKDQGFGIRV SNSWFRSKRK ERYRAKLSCS SAGFKKKSEA  120
NNPRPETRTG CPAMIVIKLV DSKSWRIVEV ELQHNHLVSP EIKRFYKSHK KMILAAQKSQ  180
QAEPVKEIHT IKLYRASVIN AAAPNGYSKV KERDVRHPTD HSKHLELKEG DAHAVYNYFC  240
RMKLTNPNFF YLMDLDDEAR LKNIFWADAR SRSAYIYFSD AIAIDTTCLT NKYELPLVSF  300
VGVNHHGQSV LLGCGFLGHE SVEYFVWMFR SWLTCMLGRH PRVILTDQSK SLQMAISEVF  360
PGTRHCYCLS YIMQRVPEKL GGLRGYEAIR KQLNQAVYNS MKIAEFETAW GSMVGQHGLG  420
ENKWLQSLHE DRQRWVPVYL KDTSFVGMIP VKENEVSKPF FDGYVHKHTS FKEFLDKYDL  480
ALQRKLMKEA TGDTESRNCS FELRTKCNFE LQLSKVYTKQ IFEKFQIEVE GMYSCFNTRQ  540
VNINGPIITF AVKERVEVEE SEKEVRQYEV LYETTNMEIR CICSLFNFRG YLCRHALNVF  600
NYNGVEEIPS QYILPRWSKD YKRRFPLDPL PNDVDVNDYV LRYNHLLSRA IQVIEEGAQS  660
RECWKASLQG LEELCRKFAL ENVDEVFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein