PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082846.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 237aa MW: 27039.1 Da PI: 9.9665

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.3e-11	68	119	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +r h +Er+RR+++ ++ Lr+l+P ++K s ++ +v+Y++++ XP_027082846.1 68 KRIIHRDVERQRRQEMAALYQSLRSLVPDeY---LQGKRSTSDHMHGTVKYVRHM 119 6888***********************77...9****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MFSMEHDELF RFLSIPPQQQ IPQDTPLMAR APNANSCKPK SCTKKRKSSV AFGDNNVLDN 60 ESPVEHKKRI IHRDVERQRR QEMAALYQSL RSLVPDEYLQ GKRSTSDHMH GTVKYVRHMK 120 RKVDELISKR DELQELMKPG CSFSMLTEFT VSLNKTSVRV QSSTTGMQII LKTTLRGGLP 180 LSKFLSVLNG EGLSVISCVS TNANEGQLHV MESEVDQGRS FDQTKLQKRL KELLYNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	47	PKSCTKKRK
2	68	80	KRIIHRDVERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-34	bHLH family protein