PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027082805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 30394 Da PI: 7.8292 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l++ +G+g +W t +++ g++R++k+c++rw++yl XP_027082805.1 14 RGPWSPEEDQILKKHLLDYGTGgNWITLPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.8e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd l+ + ++G++ W+ Ia+ + gRt++++k++w++ XP_027082805.1 69 GPFTPEEDNLICTLYSKMGSR-WSIIASQLR-GRTDNDVKNHWNS 111 89*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MGRTPCCDKT KVKRGPWSPE EDQILKKHLL DYGTGGNWIT LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGP FTPEEDNLIC TLYSKMGSRW SIIASQLRGR TDNDVKNHWN SKLKKKQMAA 120 SFRKPASNTT NDNSSRPASF TSTTSTTTPY SLETQAGAFH PNFSAHLSNL STEDYTDISV 180 GTEGSKVCSS SSKTIEYMSS SSQAQEDSII SESTSFGTIT NTINNSMPWL DDYGAIDRGL 240 PMEMTGTAAY SYEILSGIWP QETVLEALHD PYF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 6e-64 | MYB family protein |