PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082655.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 246aa    MW: 28564.7 Da    PI: 9.916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-0875123353
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                       h  +Er+RR++     e+Lr+l+P+       +K s ++    +v+YI+ 
  XP_027082655.1  75 IIHRDVERQRRQETAGLHETLRSLIPSqH---LEGKRSISDHIHATVKYIRF 123
                     5699***********************55...9*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MFSQWLSDQD ELFKFISPPR PQQQNDKLLV DVNKPPFNDL DLSTVAKSKP KQGRRRKISA  60
LENIEESPRD YIKKIIHRDV ERQRRQETAG LHETLRSLIP SQHLEGKRSI SDHIHATVKY  120
IRFQKKKVDE LKSKRAKLKE WFINPTTSKV VENENPQEDF EQPSIVVKTC RAGMEITITT  180
GSKVDLPLSR ILNFLISEGK SIKSCISTRV NERLLHVIES EVNDEKIISP NELQEKLTEI  240
ARYQIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-33bHLH family protein