PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027082635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 39270.5 Da PI: 7.1564 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.5 | 2.6e-12 | 12 | 57 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W+ eEde+l + vk+ G+++W++I ++ + Rt+k+c++rw + XP_027082635.1 12 KGPWSGEEDEILMNFVKENGPRDWSSIRSKGLLPRTGKSCRLRWVN 57 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 40.3 | 7.4e-13 | 94 | 134 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ +++ + lG++ W++Ia +++ gRt++++k++w XP_027082635.1 94 KFSAEEERVVLELQATLGNK-WAAIATYLP-GRTDNDVKNFWS 134 79******************.*********.***********5 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence |
MERLRAQEDI KKGPWSGEED EILMNFVKEN GPRDWSSIRS KGLLPRTGKS CRLRWVNKLQ 60 PNLKKRHVKL IVPASCSFIC RTCILHIVKR RGCKFSAEEE RVVLELQATL GNKWAAIATY 120 LPGRTDNDVK NFWSTRQKRL ARILRASSQP NRAHKHTAKA PVVNEASTLQ ASVSSFNQVK 180 ETSLQCHICS CFWSENANAI NILPPPDCLN MGTAGVISGV PPAVDEHTSP PQLCIQSNNH 240 QPSVSPPFGI SFSTEQPKPA LNNLPLWQEN QDFGAELGEP NFMGALTQQE SLEVGNMAQH 300 NLGLSLDELE ATGQNFSEIN DYKDKMLTIP DTLFGDLSDD MLDNLDAVPR SSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60460.1 | 5e-58 | MYB family protein |