PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027082533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20825.6 Da PI: 8.6964 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 231.2 | 2.5e-71 | 2 | 158 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ +se+vCyv+CnfCntilavsvP +s+f +vtvrCGhC++llsvn+ q+l++++ ++ k+++ + ++++ s+s+ + XP_027082533.1 2 SMDITSERVCYVHCNFCNTILAVSVPCSSMFAIVTVRCGHCANLLSVNVGALLQTLPTQDL-QKLQKQQIN---------NEDATKESGSSSKCN 86 67789*****************************************************993.332222222.........222222233333333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl XP_027082533.1 87 KFTP-FDSAEHDQPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 158 3333.3567788899999.9****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MSMDITSERV CYVHCNFCNT ILAVSVPCSS MFAIVTVRCG HCANLLSVNV GALLQTLPTQ 60 DLQKLQKQQI NNEDATKESG SSSKCNKFTP FDSAEHDQPR ITPIRPPEKR QRVPSAYNRF 120 IKEEIQRIKA SNPEISHREA FSTAAKNWAH FPHIHFGLKV DGNKQANKLD HPDAGDQGAQ 180 KSRGFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 6e-81 | YABBY family protein |