PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027081985.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 818aa    MW: 90086.7 Da    PI: 4.9296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027081985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2090145156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_027081985.1  90 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 145
                     688899***********************************************998 PP
2START148.46.7e-472875112206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     la +  +el+k+ +a ep+W + s    e +n de+++ f+  +v         ++ea r  +vv+m++ +lv  +ld + +W e ++    +a+
  XP_027081985.1 287 LAISSVEELMKMCQACEPLWLRTSdgskEVLNVDEYRRLFQW-GVdlkqnptqVRTEATRHNAVVIMNSITLVDAFLDAN-KWMELFPsivsRAK 379
                     6778899*****************99999999******9954.34688889999**************************.************** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     tl+v++sg      g lqlm+aelq++spl+p R++ f+Ry+ q  ++g+w+ivd  +d+ +++  + ++ +  ++pSg++i++++ng+s+vtwv
  XP_027081985.1 380 TLQVVTSGisgqasGSLQLMYAELQVPSPLAPtRESHFLRYCHQnAEEGTWAIVDFPLDNFNNNYPTIPYYK--RRPSGCIIQDMPNGYSRVTWV 472
                     ***********************************************************9999877888888..9******************** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ehv+ ++    + +++lv+sg ++gak+w++ lqrqce+
  XP_027081985.1 473 EHVEIDSTPLNQTINHLVSSGNVFGAKRWLSVLQRQCER 511
                     *******999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    
MFGDCQILSS MGGNGVPSDS YYPSSIQNPS FSFMTNLPFN IFPPALIPKE ENGMSRSKEE  60
ILESGSGSEH VEGGVSGNEQ EAEQQQPTKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL  120
KLSQDLGLKP RQVKFWFQNR RTQMKAQQDR ADNAILRAEN ESLKNENCRL QAALRNVVCP  180
NCGGPAVLGE MGFDEQAVRL ENARLKEEYD RVCALLSQYG GRAIPEIGTS SLLAPSLDLD  240
INMLPRKFEE PIGDCPGMLS MPFIPENPNF SGGVLILDEE KSIAMELAIS SVEELMKMCQ  300
ACEPLWLRTS DGSKEVLNVD EYRRLFQWGV DLKQNPTQVR TEATRHNAVV IMNSITLVDA  360
FLDANKWMEL FPSIVSRAKT LQVVTSGISG QASGSLQLMY AELQVPSPLA PTRESHFLRY  420
CHQNAEEGTW AIVDFPLDNF NNNYPTIPYY KRRPSGCIIQ DMPNGYSRVT WVEHVEIDST  480
PLNQTINHLV SSGNVFGAKR WLSVLQRQCE RIASLMARNI SDLGVIPSPE ARKNVMYLSQ  540
RMIRTFCMNI SNACGQSWTA LSDSAEDTVR IATRKVSGPG EPNGLILTAV STTWLPYPHY  600
QVFDLLRDER RRSQLDVLSN GNALQEVAHI ANGSHPGNCV SLLRINVASN SSQKVELMLQ  660
ESCTDDSGSL IVYTTVDVDS IQLAMNGEDP ECIPLLPVGF VIHPLENGSS SHDGSSLDND  720
QTSENGNNLP ADLSGCLLTV GLQVLASTIP TAKLNLSSVT AINQHICNTV QQISAALGNH  780
GSNIGTTSSN DNDNIIIASL GEPSAPAPPV QPDQVSTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein