PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027081984.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 820aa    MW: 90331 Da    PI: 4.8862
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027081984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2089144156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_027081984.1  89 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 144
                     688899***********************************************998 PP
2START148.46.7e-472895132206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     la +  +el+k+ +a ep+W + s    e +n de+++ f+  +v         ++ea r  +vv+m++ +lv  +ld + +W e ++    +a+
  XP_027081984.1 289 LAISSVEELMKMCQACEPLWLRTSdgskEVLNVDEYRRLFQW-GVdlkqnptqVRTEATRHNAVVIMNSITLVDAFLDAN-KWMELFPsivsRAK 381
                     6778899*****************99999999******9954.34688889999**************************.************** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     tl+v++sg      g lqlm+aelq++spl+p R++ f+Ry+ q  ++g+w+ivd  +d+ +++  + ++ +  ++pSg++i++++ng+s+vtwv
  XP_027081984.1 382 TLQVVTSGisgqasGSLQLMYAELQVPSPLAPtRESHFLRYCHQnAEEGTWAIVDFPLDNFNNNYPTIPYYK--RRPSGCIIQDMPNGYSRVTWV 474
                     ***********************************************************9999877888888..9******************** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ehv+ ++    + +++lv+sg ++gak+w++ lqrqce+
  XP_027081984.1 475 EHVEIDSTPLNQTINHLVSSGNVFGAKRWLSVLQRQCER 513
                     *******999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    
MFGDCQILSS MGGNGVPSDS YYPSSIQNPS FSFMTNLPFN IFPPALIPEE NGMSRSKEEI  60
LESGSGSEHV EGGVSGNEQE AEQQQPTKKK RYHRHTARQI QEMEALFKEC PHPDDKQRLK  120
LSQDLGLKPR QVKFWFQNRR TQMKAQQDRA DNAILRAENE SLKNENCRLQ AALRNVVCPN  180
CGGPAVLGEM GFDEQAVRLE NARLKEELMQ YDRVCALLSQ YGGRAIPEIG TSSLLAPSLD  240
LDINMLPRKF EEPIGDCPGM LSMPFIPENP NFSGGVLILD EEKSIAMELA ISSVEELMKM  300
CQACEPLWLR TSDGSKEVLN VDEYRRLFQW GVDLKQNPTQ VRTEATRHNA VVIMNSITLV  360
DAFLDANKWM ELFPSIVSRA KTLQVVTSGI SGQASGSLQL MYAELQVPSP LAPTRESHFL  420
RYCHQNAEEG TWAIVDFPLD NFNNNYPTIP YYKRRPSGCI IQDMPNGYSR VTWVEHVEID  480
STPLNQTINH LVSSGNVFGA KRWLSVLQRQ CERIASLMAR NISDLGVIPS PEARKNVMYL  540
SQRMIRTFCM NISNACGQSW TALSDSAEDT VRIATRKVSG PGEPNGLILT AVSTTWLPYP  600
HYQVFDLLRD ERRRSQLDVL SNGNALQEVA HIANGSHPGN CVSLLRINVA SNSSQKVELM  660
LQESCTDDSG SLIVYTTVDV DSIQLAMNGE DPECIPLLPV GFVIHPLENG SSSHDGSSLD  720
NDQTSENGNN LPADLSGCLL TVGLQVLAST IPTAKLNLSS VTAINQHICN TVQQISAALG  780
NHGSNIGTTS SNDNDNIIIA SLGEPSAPAP PVQPDQVSTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein