PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080940.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 697aa MW: 75652.9 Da PI: 5.701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080940.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	517	562	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_027080940.1 517 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 562 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MVDGMTDYRV HTKMNLWGNQ TPTSLTSDDN TSMMEVFMNS ADPGSLWPPM SIHQSIPSTT 60 SSTITAAGGG GMDSSSKSLP SSSFFNQETL QQRLQTLIDG AQEYWTYAIF WQSSVVDCGG 120 PSVLGWGDGY YRGEEDKGKR KNPLSSSSTN SLLEQEHRKK VLRELNSLIA GPQGSSDDAV 180 DEEVTDTEWF FLISMTQSFV NGSGLPGQAL YNSSPVWVAG ADRLASSHCE RAQQAQGFGL 240 QTLVCIPSAN GVVELGSTEL IFQSSDLMNK VRVLFNFNNM DMGSGSGSGS WPVQPESDPS 300 ALWLTDPSSS AAGVKESVNN NNNTTGQGSS IPSSANNKQM LFGNDNNPSS STLTDNPGNI 360 LNAHHNSSQQ SGGFYTREMN FSEYGFEGNS VRNATCKPES GEILNFGGES TAKRSCCANG 420 NLFSGQSPFG VGDESKSKKR SPVSRGSNDE GMLSFTSGVI LPSSGVVKSS GGGGDSDHSD 480 LEASVAKEAD SSRVVDPEKK PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV 540 PNVSKMDKAS LLGDAISYIN ELKSKLHNME SDKEELRNQI DSLKKELTSK EARNFAPPPP 600 DKDLKLASHQ GSKSLDMDID VKIIGWEAMI RVQSSKNNHP AARIMGALKD LDLELLHASV 660 SVVNDLMIQQ NTVRMGKRFY TQEQLKIALT SRVAETR

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MVDGMTDYRV HTKMNLWGNQ TPTSLTSDDN TSMMEVFMNS ADPGSLWPPM SIHQSIPSTT  60
SSTITAAGGG GMDSSSKSLP SSSFFNQETL QQRLQTLIDG AQEYWTYAIF WQSSVVDCGG  120
PSVLGWGDGY YRGEEDKGKR KNPLSSSSTN SLLEQEHRKK VLRELNSLIA GPQGSSDDAV  180
DEEVTDTEWF FLISMTQSFV NGSGLPGQAL YNSSPVWVAG ADRLASSHCE RAQQAQGFGL  240
QTLVCIPSAN GVVELGSTEL IFQSSDLMNK VRVLFNFNNM DMGSGSGSGS WPVQPESDPS  300
ALWLTDPSSS AAGVKESVNN NNNTTGQGSS IPSSANNKQM LFGNDNNPSS STLTDNPGNI  360
LNAHHNSSQQ SGGFYTREMN FSEYGFEGNS VRNATCKPES GEILNFGGES TAKRSCCANG  420
NLFSGQSPFG VGDESKSKKR SPVSRGSNDE GMLSFTSGVI LPSSGVVKSS GGGGDSDHSD  480
LEASVAKEAD SSRVVDPEKK PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  540
PNVSKMDKAS LLGDAISYIN ELKSKLHNME SDKEELRNQI DSLKKELTSK EARNFAPPPP  600
DKDLKLASHQ GSKSLDMDID VKIIGWEAMI RVQSSKNNHP AARIMGALKD LDLELLHASV  660
SVVNDLMIQQ NTVRMGKRFY TQEQLKIALT SRVAETR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	499	507	KKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein