PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080816.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 522aa MW: 58911.7 Da PI: 6.2875

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.2e-14	323	369	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N++f L +l+P++ +Kl+K++iL A++Y+k+L+ XP_027080816.1 323 NHVLAERKRREKLNERFMMLGSLVPSN-----GKLDKVSILDGAIDYLKELE 369 7999********************9.....9**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MSFVFITGQG LPGRTLAKNQ ITWLCNAHQA DSKVFPRSLL AKSASIQTVV CFPHLGGVVE 60 LGVTEPVVED RNLIRHIKSA FLDNPYPVIS KIPQYVPNTN AKDIVVCGLD DDMIEANFEP 120 LVECEDVKIC SPSNSTTGFE DADQQAQNSH MMEGTSDEAC HVQSWRFMDD EISNCIHDSM 180 NSGDCTPQTY ANGEKGVPLS NEETVNHDFK HDLQECNLKK LDHFNFRSDD AHYQGVLSAL 240 LKSSHQLILG PYFTNSNQES SFVSWKIERP QFVQKQGAMS QRVLKSVVFE VPRMHGDWKL 300 KSSKGYGKRE SIWRPEADEI DNNHVLAERK RREKLNERFM MLGSLVPSNG KLDKVSILDG 360 AIDYLKELER RVEELESVKE AIELEARTKR LQQEATERTS GNYIMNKVGK SRKPVISKRK 420 ASNLEEIEAE TNYCTLTECS SDDLTVTVIN RNALIELECP WTESVFCEIM EAVSKLNLDS 480 HTVQSSNTDG TLTVKIRAKF KGSKVATPGM IRRALQRVLR KY

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MSFVFITGQG LPGRTLAKNQ ITWLCNAHQA DSKVFPRSLL AKSASIQTVV CFPHLGGVVE  60
LGVTEPVVED RNLIRHIKSA FLDNPYPVIS KIPQYVPNTN AKDIVVCGLD DDMIEANFEP  120
LVECEDVKIC SPSNSTTGFE DADQQAQNSH MMEGTSDEAC HVQSWRFMDD EISNCIHDSM  180
NSGDCTPQTY ANGEKGVPLS NEETVNHDFK HDLQECNLKK LDHFNFRSDD AHYQGVLSAL  240
LKSSHQLILG PYFTNSNQES SFVSWKIERP QFVQKQGAMS QRVLKSVVFE VPRMHGDWKL  300
KSSKGYGKRE SIWRPEADEI DNNHVLAERK RREKLNERFM MLGSLVPSNG KLDKVSILDG  360
AIDYLKELER RVEELESVKE AIELEARTKR LQQEATERTS GNYIMNKVGK SRKPVISKRK  420
ASNLEEIEAE TNYCTLTECS SDDLTVTVIN RNALIELECP WTESVFCEIM EAVSKLNLDS  480
HTVQSSNTDG TLTVKIRAKF KGSKVATPGM IRRALQRVLR KY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	333	ERKRRE
2	329	334	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-130	bHLH family protein