PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080815.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 638aa MW: 72092.6 Da PI: 5.9426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.6e-14	439	485	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N++f L +l+P++ +Kl+K++iL A++Y+k+L+ XP_027080815.1 439 NHVLAERKRREKLNERFMMLGSLVPSN-----GKLDKVSILDGAIDYLKELE 485 7999********************9.....9**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MATGRLQNQP AESLRKQLAL AVKSIQWSYA IFWSISCRQP GVLEWIDGYY NGDIKTRKTI 60 QAAEPSADQL ELQRSEQLRE LYESLSAAET SLQAKRPSVA LSPEDLTDTE WYFLVCMSFV 120 FITGQGLPGR TLAKNQITWL CNAHQADSKV FPRSLLAKSA SIQTVVCFPH LGGVVELGVT 180 EPVVEDRNLI RHIKSAFLDN PYPVISKIPQ YVPNTNAKDI VVCGLDDDMI EANFEPLVEC 240 EDVKICSPSN STTGFEDADQ QAQNSHMMEG TSDEACHVQS WRFMDDEISN CIHDSMNSGD 300 CTPQTYANGE KGVPLSNEET VNHDFKHDLQ ECNLKKLDHF NFRSDDAHYQ GVLSALLKSS 360 HQLILGPYFT NSNQESSFVS WKIERPQFVQ KQGAMSQRVL KSVVFEVPRM HGDWKLKSSK 420 GYGKRESIWR PEADEIDNNH VLAERKRREK LNERFMMLGS LVPSNGKLDK VSILDGAIDY 480 LKELERRVEE LESVKEAIEL EARTKRLQQE ATERTSGNYI MNKVGKSRKP VISKRKASNL 540 EEIEAETNYC TLTECSSDDL TVTVINRNAL IELECPWTES VFCEIMEAVS KLNLDSHTVQ 600 SSNTDGTLTV KIRAKFKGSK VATPGMIRRA LQRVLRKY

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MATGRLQNQP AESLRKQLAL AVKSIQWSYA IFWSISCRQP GVLEWIDGYY NGDIKTRKTI  60
QAAEPSADQL ELQRSEQLRE LYESLSAAET SLQAKRPSVA LSPEDLTDTE WYFLVCMSFV  120
FITGQGLPGR TLAKNQITWL CNAHQADSKV FPRSLLAKSA SIQTVVCFPH LGGVVELGVT  180
EPVVEDRNLI RHIKSAFLDN PYPVISKIPQ YVPNTNAKDI VVCGLDDDMI EANFEPLVEC  240
EDVKICSPSN STTGFEDADQ QAQNSHMMEG TSDEACHVQS WRFMDDEISN CIHDSMNSGD  300
CTPQTYANGE KGVPLSNEET VNHDFKHDLQ ECNLKKLDHF NFRSDDAHYQ GVLSALLKSS  360
HQLILGPYFT NSNQESSFVS WKIERPQFVQ KQGAMSQRVL KSVVFEVPRM HGDWKLKSSK  420
GYGKRESIWR PEADEIDNNH VLAERKRREK LNERFMMLGS LVPSNGKLDK VSILDGAIDY  480
LKELERRVEE LESVKEAIEL EARTKRLQQE ATERTSGNYI MNKVGKSRKP VISKRKASNL  540
EEIEAETNYC TLTECSSDDL TVTVINRNAL IELECPWTES VFCEIMEAVS KLNLDSHTVQ  600
SSNTDGTLTV KIRAKFKGSK VATPGMIRRA LQRVLRKY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	444	449	ERKRRE
2	445	450	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-173	bHLH family protein