PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080812.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 674aa MW: 76341.8 Da PI: 6.7374

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.7e-14	475	521	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N++f L +l+P++ +Kl+K++iL A++Y+k+L+ XP_027080812.1 475 NHVLAERKRREKLNERFMMLGSLVPSN-----GKLDKVSILDGAIDYLKELE 521 7999********************9.....9**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MVEIRVILSW EVGLRRKSKF SLISLRRKGC AVCYRIMATG RLQNQPAESL RKQLALAVKS 60 IQWSYAIFWS ISCRQPGVLE WIDGYYNGDI KTRKTIQAAE PSADQLELQR SEQLRELYES 120 LSAAETSLQA KRPSVALSPE DLTDTEWYFL VCMSFVFITG QGLPGRTLAK NQITWLCNAH 180 QADSKVFPRS LLAKSASIQT VVCFPHLGGV VELGVTEPVV EDRNLIRHIK SAFLDNPYPV 240 ISKIPQYVPN TNAKDIVVCG LDDDMIEANF EPLVECEDVK ICSPSNSTTG FEDADQQAQN 300 SHMMEGTSDE ACHVQSWRFM DDEISNCIHD SMNSGDCTPQ TYANGEKGVP LSNEETVNHD 360 FKHDLQECNL KKLDHFNFRS DDAHYQGVLS ALLKSSHQLI LGPYFTNSNQ ESSFVSWKIE 420 RPQFVQKQGA MSQRVLKSVV FEVPRMHGDW KLKSSKGYGK RESIWRPEAD EIDNNHVLAE 480 RKRREKLNER FMMLGSLVPS NGKLDKVSIL DGAIDYLKEL ERRVEELESV KEAIELEART 540 KRLQQEATER TSGNYIMNKV GKSRKPVISK RKASNLEEIE AETNYCTLTE CSSDDLTVTV 600 INRNALIELE CPWTESVFCE IMEAVSKLNL DSHTVQSSNT DGTLTVKIRA KFKGSKVATP 660 GMIRRALQRV LRKY

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MVEIRVILSW EVGLRRKSKF SLISLRRKGC AVCYRIMATG RLQNQPAESL RKQLALAVKS  60
IQWSYAIFWS ISCRQPGVLE WIDGYYNGDI KTRKTIQAAE PSADQLELQR SEQLRELYES  120
LSAAETSLQA KRPSVALSPE DLTDTEWYFL VCMSFVFITG QGLPGRTLAK NQITWLCNAH  180
QADSKVFPRS LLAKSASIQT VVCFPHLGGV VELGVTEPVV EDRNLIRHIK SAFLDNPYPV  240
ISKIPQYVPN TNAKDIVVCG LDDDMIEANF EPLVECEDVK ICSPSNSTTG FEDADQQAQN  300
SHMMEGTSDE ACHVQSWRFM DDEISNCIHD SMNSGDCTPQ TYANGEKGVP LSNEETVNHD  360
FKHDLQECNL KKLDHFNFRS DDAHYQGVLS ALLKSSHQLI LGPYFTNSNQ ESSFVSWKIE  420
RPQFVQKQGA MSQRVLKSVV FEVPRMHGDW KLKSSKGYGK RESIWRPEAD EIDNNHVLAE  480
RKRREKLNER FMMLGSLVPS NGKLDKVSIL DGAIDYLKEL ERRVEELESV KEAIELEART  540
KRLQQEATER TSGNYIMNKV GKSRKPVISK RKASNLEEIE AETNYCTLTE CSSDDLTVTV  600
INRNALIELE CPWTESVFCE IMEAVSKLNL DSHTVQSSNT DGTLTVKIRA KFKGSKVATP  660
GMIRRALQRV LRKY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	480	485	ERKRRE
2	481	486	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-173	bHLH family protein