PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080547.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 360aa    MW: 39869.4 Da    PI: 5.8094
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17253287135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_027080547.1 253 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 287
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
METPEFFQGG YYNTHMAPEK RLSDAKNSDH FIIDDLLDYP NDDGMVADGT FDTTITAGTS  60
TDSSTVVDTS CNSSFSGSTE PHFPGGDMGC RNFTDGQFSS ELCVPYDDLA ELEWLSNFVE  120
ESFSSEDLQK LQIISGMKAR TNEVSETPDD QPEPNRETAT PMLRPEMSVP AKARSKRSRA  180
APCNWTSRLL MVSPSTTTLT AATTTTIMAA AMSSSSDSEM TPSTGKKAVK APSKKTEVYD  240
QNASMANGEG RKCLHCATDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV  300
LTKHSNSHRK VLELRRQKEM LRAQQQQHQF LHQNMMFDVS SNGDDYLIHQ HIGPDFRQLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-85GATA family protein