PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027079891.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 705aa MW: 82024.5 Da PI: 7.2858

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027079891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.5	2.2e-23	93	177	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ ++el+HnH ++ XP_027079891.1 93 DFYNGYAKDQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSKRWRIVEVELQHNHLVS 177 6*******************999*************99888.....9********************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MLILSFFSTF HFFYLAFSLF ETFMSSSVSL LLQMEVVCLN SEPAFNEGDE YEHEGDSATG 60 ENADELCAAP HLKREPPPPT VGLEFDSFDE AYDFYNGYAK DQGFGIRVSN SWFRSKRKER 120 YRAKLSCSSA GFKKKSEANN PRPETRTGCP AMIVIKLVDS KRWRIVEVEL QHNHLVSPEI 180 KRFYKSHKKM ILAAQKSQQA EPVKEIHTIK LYRTSVINAA PNGYSKVKER DVRHPTDHSK 240 HLELKEGDAH AVYNYFCRMK LTNPNFFYLM DLDDEGRLKN IFWADARSRS AYIYFSDAIA 300 IDTTCLTNKY ELPLVSFVGV NHHGQSVLLG CGFLGHESVE YFVWMFRSWL TCMLGRHPRV 360 ILTDQSKSLQ MAISEVFPGT RHCYCLSYIM QRVPEKLGGL RGYEAIRKQL NQAVYNSMKI 420 AEFETAWGSM VGQHGLGENK WLQSLHEDRQ RWVPVYIKDT SFVGMIPVKE NEVSKPLFDG 480 YVHKHTSFKE FLDKNDLALQ RKLMKEATGD TESRNCSFEL RTKCNFELQL SKVYTKQIFE 540 KFQIEVEGMY SCFNTRQVNI NGPIITYAVK ERVEVEESEK EVRQYEVLYE TTNMEIRCIC 600 SLFNFRGYLC RHALNVFNYN GVEEIPSQYI LPRWSKDYKR RFPLDPFPND VDLNDYVLRY 660 NHLLSRAIQV IEEGAQSREC WKASLQGLEE LCRKFALENV DEVYL

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MLILSFFSTF HFFYLAFSLF ETFMSSSVSL LLQMEVVCLN SEPAFNEGDE YEHEGDSATG  60
ENADELCAAP HLKREPPPPT VGLEFDSFDE AYDFYNGYAK DQGFGIRVSN SWFRSKRKER  120
YRAKLSCSSA GFKKKSEANN PRPETRTGCP AMIVIKLVDS KRWRIVEVEL QHNHLVSPEI  180
KRFYKSHKKM ILAAQKSQQA EPVKEIHTIK LYRTSVINAA PNGYSKVKER DVRHPTDHSK  240
HLELKEGDAH AVYNYFCRMK LTNPNFFYLM DLDDEGRLKN IFWADARSRS AYIYFSDAIA  300
IDTTCLTNKY ELPLVSFVGV NHHGQSVLLG CGFLGHESVE YFVWMFRSWL TCMLGRHPRV  360
ILTDQSKSLQ MAISEVFPGT RHCYCLSYIM QRVPEKLGGL RGYEAIRKQL NQAVYNSMKI  420
AEFETAWGSM VGQHGLGENK WLQSLHEDRQ RWVPVYIKDT SFVGMIPVKE NEVSKPLFDG  480
YVHKHTSFKE FLDKNDLALQ RKLMKEATGD TESRNCSFEL RTKCNFELQL SKVYTKQIFE  540
KFQIEVEGMY SCFNTRQVNI NGPIITYAVK ERVEVEESEK EVRQYEVLYE TTNMEIRCIC  600
SLFNFRGYLC RHALNVFNYN GVEEIPSQYI LPRWSKDYKR RFPLDPFPND VDLNDYVLRY  660
NHLLSRAIQV IEEGAQSREC WKASLQGLEE LCRKFALENV DEVYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein