PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078703.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 328aa    MW: 35870.6 Da    PI: 7.9727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09241283855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  XP_027078703.1 241 AAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 283
                     569*******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MELVKDHAPK KSTLCLIQPH PHYENDQFRE VSQNAFPGLS SSDKSTGVPR NFGVTSPSSL  60
SSPSSTNSDG LGYQQGIKTL PEDGNSVINF RGVYGDFANA GGSLLSFDHS QNSFPGIITT  120
QDDYSVWEDN LHFTYQDQLN NSRCSTPNPR PLENSNNNQS SSSYASTSNG VPFGWHSTEV  180
NANASKNNSI QDLGRQEACT SAKRPYTEES TQALKKQCTS VTKTTALKSK STPSKDPQSV  240
AAKNRRERIS ERLKILQDLV PNGSKVDLVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGA  300
KAPDLSQVKE AIDAILASQR DRNSSSSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-57bHLH family protein