PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077375.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 437aa MW: 47890.5 Da PI: 5.4682

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.8e-13	365	410	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_027077375.1 365 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 410 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDFQRSNQHQ QMSGGLTRYR SAPSSYFSSF FDAAADIIPR SGGGFGGDDL DHFLNRFMPS 60 NRVNAQAQDS NSNNSFANSM NMQQSQSQFV ASMKQEAEVM QQPEQLQQLQ QTNQNDYSQI 120 SQQMMYQSQA QVQQNTNNTQ LSNASAGDNS YRLLSSVNSN RLTPTKIESG GGISNLIRYN 180 SSPAGLFANI NIENEHGAMR GMGNFGAGNN ANAEASFSSA SRFKSQMDFS SAQATSSGLM 240 SPISEIDSTG MGDNNLGDKK FGEGQRNDSG YITGFPVTSW DDSALLSDSF LKGLGDDDDD 300 SKTLSNAVAS ENQNNEGRNR PSTLLAHHLS LPNTSDELSA IETLMQDSVL CKLRAKRGCA 360 THPRSIAERV RRTKISERMR KLQELVPNMD KQTNTADMLD LAVEYIKDLQ KQVKTLSDNR 420 AKCTCFNQKS CGSEGSM

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDFQRSNQHQ QMSGGLTRYR SAPSSYFSSF FDAAADIIPR SGGGFGGDDL DHFLNRFMPS  60
NRVNAQAQDS NSNNSFANSM NMQQSQSQFV ASMKQEAEVM QQPEQLQQLQ QTNQNDYSQI  120
SQQMMYQSQA QVQQNTNNTQ LSNASAGDNS YRLLSSVNSN RLTPTKIESG GGISNLIRYN  180
SSPAGLFANI NIENEHGAMR GMGNFGAGNN ANAEASFSSA SRFKSQMDFS SAQATSSGLM  240
SPISEIDSTG MGDNNLGDKK FGEGQRNDSG YITGFPVTSW DDSALLSDSF LKGLGDDDDD  300
SKTLSNAVAS ENQNNEGRNR PSTLLAHHLS LPNTSDELSA IETLMQDSVL CKLRAKRGCA  360
THPRSIAERV RRTKISERMR KLQELVPNMD KQTNTADMLD LAVEYIKDLQ KQVKTLSDNR  420
AKCTCFNQKS CGSEGSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	3e-53	bHLH family protein