PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077368.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 441aa MW: 48382 Da PI: 5.2786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.9e-13	369	414	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_027077368.1 369 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 414 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MDFQRSNQHQ QMSGGLTRYR SAPSSYFSSF FDAAADIIPR SGGGFGGDDL DHFLNRFMPS 60 NRVNAQAQDS NSNNSFANSM NMQQSQSQFV ASMKQEAEVM QQPEQLQQLQ QTNQNDYSQI 120 SQQMMYQSQA QVQQNTNNTQ LSNASAGDNS YRLLSSVNSN RLTPTKIESG GGISNLIRYN 180 SSPAGLFANI NIENEHGAMR GMGNFGAGNN ANAEASFSSA SRFKSQMDFS SAQATSSGLM 240 SPISEIDSTG MGDNNLGDKK FGEGQRNDSG YITGFPVTSW DDSALLSDSF LKGLGDDDDD 300 SKTLSNAVAS ENQFTDQNNE GRNRPSTLLA HHLSLPNTSD ELSAIETLMQ DSVLCKLRAK 360 RGCATHPRSI AERVRRTKIS ERMRKLQELV PNMDKQTNTA DMLDLAVEYI KDLQKQVKTL 420 SDNRAKCTCF NQKSCGSEGS M

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MDFQRSNQHQ QMSGGLTRYR SAPSSYFSSF FDAAADIIPR SGGGFGGDDL DHFLNRFMPS  60
NRVNAQAQDS NSNNSFANSM NMQQSQSQFV ASMKQEAEVM QQPEQLQQLQ QTNQNDYSQI  120
SQQMMYQSQA QVQQNTNNTQ LSNASAGDNS YRLLSSVNSN RLTPTKIESG GGISNLIRYN  180
SSPAGLFANI NIENEHGAMR GMGNFGAGNN ANAEASFSSA SRFKSQMDFS SAQATSSGLM  240
SPISEIDSTG MGDNNLGDKK FGEGQRNDSG YITGFPVTSW DDSALLSDSF LKGLGDDDDD  300
SKTLSNAVAS ENQFTDQNNE GRNRPSTLLA HHLSLPNTSD ELSAIETLMQ DSVLCKLRAK  360
RGCATHPRSI AERVRRTKIS ERMRKLQELV PNMDKQTNTA DMLDLAVEYI KDLQKQVKTL  420
SDNRAKCTCF NQKSCGSEGS M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	8e-53	bHLH family protein