PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077139.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GeBP
Protein Properties Length: 195aa    MW: 22334.7 Da    PI: 9.9126
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077139.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57364.52.5e-2013104495
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                      ++ws+e    lLq +i+fkak+g+++ +d + f++f++++ +f +sksq+ eK+rrLK K+ ++ kk  k gk++ +sk++  +++++s++i
  XP_027077139.1  13 GMVWSDEQVTKLLQCMIEFKAKKGVDADSDPTVFHQFFEQEFQFGYSKSQVYEKVRRLKMKYFNNLKKfEKVGKDTGISKAK-FQTLNISRQI 104
                     589*****************************************************************77788888888776.5666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MDKPSSVSAA TAGMVWSDEQ VTKLLQCMIE FKAKKGVDAD SDPTVFHQFF EQEFQFGYSK  60
SQVYEKVRRL KMKYFNNLKK FEKVGKDTGI SKAKFQTLNI SRQISSGGAG AGDFESKYPL  120
SSQSFEVDSR DVMKFGGKTA DELSFLKGNM HLIGDDKAKE LERKWKLLHA EYFFKSLELM  180
KEQTRMVLEA TMRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.14e-06GeBP family protein