PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076853.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GeBP

Protein Properties

Length: 355aa MW: 40793.5 Da PI: 8.7704

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	85.5	7.1e-27	135	232	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 f r+++e+Dei +LqG+id+++ +++ + s+++ a+yef+k++++f+++k+q+ KirrLK+ + k +k + sg++p+f ++h++ +felskk XP_027076853.1 135 SFARVFTEKDEIDILQGVIDYAKLQNVtDLSAHTYAVYEFLKGKLHFEFTKTQVYGKIRRLKNNYLKILEKrKGSGNDPVFLSPHESISFELSKK 229 689****************88777747788*******************************99885679**************** PP DUF573 95 iWg 97 +Wg XP_027076853.1 230 LWG 232 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGIKKGDALQ GEEIPEEEED KLENDGIPQT QHGKEISEAA LQGEEIPEED QEEKERIPQT 60 QQAAVREASP RPTQYRPTSG TGYDSDAPQK HSFKRAKRDQ KDGARKNKTR KDVVVIGARK 120 KENQKKASVY ATPSSFARVF TEKDEIDILQ GVIDYAKLQN VTDLSAHTYA VYEFLKGKLH 180 FEFTKTQVYG KIRRLKNNYL KILEKRKGSG NDPVFLSPHE SISFELSKKL WGGVDFVDDV 240 KSGMKKKMDG KKAMVRKLQL KHDDEVNVEE DQGGFKPNHP FLEESSDVKN LELLWMPESL 300 KVFMRGNMTL IDCEKAKELE VKWKELRRKE IELFLMKLNL RMELINHVLD AMKKG

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGIKKGDALQ GEEIPEEEED KLENDGIPQT QHGKEISEAA LQGEEIPEED QEEKERIPQT  60
QQAAVREASP RPTQYRPTSG TGYDSDAPQK HSFKRAKRDQ KDGARKNKTR KDVVVIGARK  120
KENQKKASVY ATPSSFARVF TEKDEIDILQ GVIDYAKLQN VTDLSAHTYA VYEFLKGKLH  180
FEFTKTQVYG KIRRLKNNYL KILEKRKGSG NDPVFLSPHE SISFELSKKL WGGVDFVDDV  240
KSGMKKKMDG KKAMVRKLQL KHDDEVNVEE DQGGFKPNHP FLEESSDVKN LELLWMPESL  300
KVFMRGNMTL IDCEKAKELE VKWKELRRKE IELFLMKLNL RMELINHVLD AMKKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	112	RKNKTRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	2e-17	GeBP family protein