PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076833.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 344aa MW: 39247.7 Da PI: 4.8171

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076833.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.6e-12	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l + G +W+ +++ g+ R++k+c++rw +yl XP_027076833.1 14 KGPWSADEDMKLTSFILTNGQCCWRDVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	52.2	1.4e-16	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d++ qlG++ W++Ia++++ gRt++++k++w+++ XP_027076833.1 70 LSKHEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 5899*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGRRPCCDKV GLTKGPWSAD EDMKLTSFIL TNGQCCWRDV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SKHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLINMG 120 IDPVTHKPLP QPTSATDQSQ EEQPKNHPDS DQETKKEPTS SVSINDIISE MDEQKREAET 180 SMQSTLTDAI QEEEDKSISI PQCQIESSSV EFNNVFSIDE VPMIEPDEIF IPFARASSTL 240 SSTSSSSSYS SFDRNSSNCN VFGHHQEFFP TIIHAQSSFD HYPTDKMNVD FWDDDFISNL 300 DMLMNDDSDR NNLAAVIGLE PSPAQYHVEM VLLDEDYSWK FDHF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGRRPCCDKV GLTKGPWSAD EDMKLTSFIL TNGQCCWRDV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SKHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLINMG  120
IDPVTHKPLP QPTSATDQSQ EEQPKNHPDS DQETKKEPTS SVSINDIISE MDEQKREAET  180
SMQSTLTDAI QEEEDKSISI PQCQIESSSV EFNNVFSIDE VPMIEPDEIF IPFARASSTL  240
SSTSSSSSYS SFDRNSSNCN VFGHHQEFFP TIIHAQSSFD HYPTDKMNVD FWDDDFISNL  300
DMLMNDDSDR NNLAAVIGLE PSPAQYHVEM VLLDEDYSWK FDHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	1e-85	MYB family protein