PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076751.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 346aa MW: 38769.8 Da PI: 8.2312

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.6e-42	28	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrrkC+++Cv+apyfp +qp+kf nvh++FGasnv kll++l + +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++++l+ XP_027076751.1 28 PCAACKCLRRKCTQECVFAPYFPPDQPQKFINVHRVFGASNVAKLLNELGTGQREDAVNSLAYEAEYRLRDPVYGCVGLISILQQKLKQVQHDLN 122 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_027076751.1 123 NAKKE 127 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MLVELMFSDN NTLLLRKKRK NMSSSNSPCA ACKCLRRKCT QECVFAPYFP PDQPQKFINV 60 HRVFGASNVA KLLNELGTGQ REDAVNSLAY EAEYRLRDPV YGCVGLISIL QQKLKQVQHD 120 LNNAKKELAT YIGPSAMLPL FQHPGFMQQH PNNPSASTVM PYAMQPMIGL PTGVAAPHGG 180 PLIIRDAQQQ QQQQQQQQMY EAQQYAAAVA ARDQEMYRAY EQQQQQQPPP QELMRFNSGF 240 EGAGPAAATA FNTMSCGAAM SPSLALGSYE AVPYHQISQQ QQQQQQLPPE HSHSHHHHHN 300 QFQLQSQLML QQQLPLQQSH HQPQAAQQQH PQRAKSEEGR SVGPSC

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MLVELMFSDN NTLLLRKKRK NMSSSNSPCA ACKCLRRKCT QECVFAPYFP PDQPQKFINV  60
HRVFGASNVA KLLNELGTGQ REDAVNSLAY EAEYRLRDPV YGCVGLISIL QQKLKQVQHD  120
LNNAKKELAT YIGPSAMLPL FQHPGFMQQH PNNPSASTVM PYAMQPMIGL PTGVAAPHGG  180
PLIIRDAQQQ QQQQQQQQMY EAQQYAAAVA ARDQEMYRAY EQQQQQQPPP QELMRFNSGF  240
EGAGPAAATA FNTMSCGAAM SPSLALGSYE AVPYHQISQQ QQQQQQLPPE HSHSHHHHHN  300
QFQLQSQLML QQQLPLQQSH HQPQAAQQQH PQRAKSEEGR SVGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-79	LBD family protein