PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076632.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 334aa    MW: 36740.6 Da    PI: 8.5734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81e-09247289855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  XP_027076632.1 247 AAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 289
                     569*******************5.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MELVKDHAPK KSTLCLIRPH PHYENDQFRE VSQNAFPGLY KIEEGSNSDK STGIPRNFGV  60
TSPSSLSSPS STNSDGLGYQ QGIKTLPEDG NSVINFRGVY GDFANAGGSL LSFDHSQNSF  120
PRLITTQDDY SVWEDNLHFN YQNQLNNARC STPNPRLLEN SNNNQSSSSY ASTSNGVPFG  180
WHSTEVNANA SKNNSIQDLG RQEACTSAKR PYTEESTQAL KKQCASVTKT TALKSKSTPS  240
KDPQSVAAKN RRERISERLK ILQDLVPNGS KVDLVTMLEK AISYVKFLQL QVKVLATDEF  300
WPAQGAKAPD LSQVKEAIDA ILASQRDRNS SSSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-57bHLH family protein