PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076082.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 331aa MW: 39054.5 Da PI: 10.0482

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.9	4.1e-14	11	101	1	94
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k l+ d l++ +++p f++++ +++++++++ +++ +sW v++ rkk++ y+ + W +Fvk+++Lk gD ++F+l+++++f XP_027076082.1 11 FIKLLME-DDLARE-IRIPYAFVRNFkeKLSSRCTIKSEAKNSVRKSWPVRI--RKKGCYyYICKLSWPKFVKDHHLKLGDYLLFHLIDKTTF-- 99 5666654.555554.8*****9887766666776667777777***..999999667788*******************987766.. PP EE CS B3 93 vv 94 +v XP_027076082.1 100 RV 101 44 PP
2	B3	40.1	6.4e-13	254	319	17	89
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +p++f ++ ++ +k+++l+ e+ r+W vk+ + +s+ ++kGW eF ka +L+ g+++ F+l +rs XP_027076082.1 254 NIPRPFSRATKLAM--EKEVVLRGEDQREWPVKI--NERSE---IGKGWTEFRKAYKLEKGEICRFTLLERSA 319 69***9998885..458***********..77774...8********************887654 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MEHNYNFNPS FIKLLMEDDL AREIRIPYAF VRNFKEKLSS RCTIKSEAKN SVRKSWPVRI 60 RKKGCYYYIC KLSWPKFVKD HHLKLGDYLL FHLIDKTTFR VKPYGADCSP KKFNVHKSSS 120 SSSDDESGDG SEERFDDSGE TEFYGDDGIR PSKVHRARKK VYTKYQIDRD NFRSNKFRKL 180 RKTRKSGVGK QVLEIESEDG EEVEANETDG YFDLNAENPY FILRLKQYHM HRLLEGFISK 240 ENKYLQSSRK LVKNIPRPFS RATKLAMEKE VVLRGEDQRE WPVKINERSE IGKGWTEFRK 300 AYKLEKGEIC RFTLLERSAR KNGHEMLKGA P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	1e-09	B3 family protein