PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027075728.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 39124.5 Da PI: 4.7647 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l+ + G +W+ +++ g+ R++k+c++rw +yl XP_027075728.1 14 RGPWSADEDMKLISFILTNGQCCWRDVPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 8.9e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d++ qlG++ W++Ia++++ gRt++++k++w+++ XP_027075728.1 70 LSEHEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 5899***************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence |
MGRRPCCDKV GLTRGPWSAD EDMKLISFIL TNGQCCWRDV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLMNMG 120 IDPVTHKPLP QSTSSTEQPQ EEQPKNHPDS DQEPKKEPAS SVSINDIISE MDEQKREAET 180 SMQSTLTDAI QEEEDKSISI PQCQIDSSSV EFNNVFSIDE VPMIEPDEIF IPFARASSTL 240 SSTSSSSCSS FDRNSSNCNV FGHHQEFFPT INHSQSSFDH YPTDKMIVDF WDDDFISNLD 300 KLTNDDSDRN NLAAVIGLEP SPAQYHVEMV LLDEDYSWKF DHF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 1e-86 | MYB family protein |