PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075640.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 330aa    MW: 36450.2 Da    PI: 10.011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000391001341046
                     HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLek 46 
                     + RR+++N+ f+eL  +l + +      K++ a+i+  
  XP_027075640.1 100 KLRRNELNEHFQELGNILDTdS---VRLKNDEATIVIS 134
                     78****************9944...6666777776655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDREKIFKEV FEPISLNPIL KSSDQSSQNE VKRAISELRL GIGLYRSFDH ASRNEEKRAL  60
AELRLGVGPY SSGSKRRQED DLDSNGAVVA KTRHQAHGKK LRRNELNEHF QELGNILDTD  120
SVRLKNDEAT IVISPIQALK DLASEVSRLQ SEQAAILQDI KKLAKENKEL REKTSLQFDV  180
GAFEVQRQQR HRSMFPRSAI DPSAVMACAF SYPVAQSVSS GPYPRHTPSL HPKPFLANQS  240
AVPSDPGVMM ILRSAAATPH INKPSSRNAS TPCIFGKEIA RNGSSGQDRS GNGEKSGDIP  300
DMVTDLELAI PGSTAQKPLP RDKGKRPLRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.19e-30bHLH family protein