PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075059.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ZF-HD

Protein Properties

Length: 361aa MW: 38935.8 Da PI: 7.8702

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	112.2	2.7e-35	75	131	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee XP_027075059.1 75 VTYKECLKNHAASLGGHAVDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPEE 131 79****************************9******************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MDLTVTNTTI TTTASVKTPE AETETPTRIQ PSKPSSFSNG VLKRHPAVHH HFHHHHASFN 60 NNNNHHHHPH ATLLVTYKEC LKNHAASLGG HAVDGCGEFM PSPTATPTDP TSLKCAACGC 120 HRNFHRREPE EPLPPPNTTA ALEYQPHHRH HPPPPLPPAQ RSSGGHSSPS SPSPPPISSS 180 YYPSAPHMLL ALSAGLSGPP QDSNIPITPT ANAGAAVTAG NSNGRKRYRT KFTPDQKEKM 240 LDFAEKVGWK IQKRDEDLIA EFCNEIGVDK GVLKVWMHNN KNTFGKRDQA NISSGGANSA 300 AAGAAATTDN GNGMEFTIHY HHQNHENNND NKNGSHNHEL MHHSDSVSAH VVATNGSSSS 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MDLTVTNTTI TTTASVKTPE AETETPTRIQ PSKPSSFSNG VLKRHPAVHH HFHHHHASFN  60
NNNNHHHHPH ATLLVTYKEC LKNHAASLGG HAVDGCGEFM PSPTATPTDP TSLKCAACGC  120
HRNFHRREPE EPLPPPNTTA ALEYQPHHRH HPPPPLPPAQ RSSGGHSSPS SPSPPPISSS  180
YYPSAPHMLL ALSAGLSGPP QDSNIPITPT ANAGAAVTAG NSNGRKRYRT KFTPDQKEKM  240
LDFAEKVGWK IQKRDEDLIA EFCNEIGVDK GVLKVWMHNN KNTFGKRDQA NISSGGANSA  300
AAGAAATTDN GNGMEFTIHY HHQNHENNND NKNGSHNHEL MHHSDSVSAH VVATNGSSSS  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	2e-33	ZF-HD family protein