PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074875.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 299aa    MW: 33384.6 Da    PI: 8.3749
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind302.71.3e-921029927301
       GAGA_bind  27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..salpvgvqvlsgtksidslqqlse.pq 118
                       m++ aerda+irern+al e+k a+ erdma lqrd+a+aern a+ erd++++al+ ++ s++   +++++ +v +gt+ ++  ++++   +
  XP_027074875.1  10 TYMAITAERDAAIRERNMALEERKRAFSERDMAMLQRDAAIAERNSAIQERDEAIAALQIRDCSVNnmLSDSAEDGVADGTEDMHYQHMHHAmVN 104
                     4588999*****************************************************999988655677888999******98888544566 PP

       GAGA_bind 119 ledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader...............skaekksidlvl 198
                      + s+ ++  +e+ +++++ +++ +a++++++k+++ +k+ k++++ k + ++  +    +++s++                    ++k+ +++l
  XP_027074875.1 105 AAFSPRDILTSETFNSTQVASETAKATKVRQPKEGKMTKSVKSPRSPKRRAEGMIK--PLTPASSN-GwnaghdlkreeelegHLGTWKD-NIGL 195
                     66777778899999999999999999999999988888877777766555543222..22111111.01234455556677656666765.8*** PP

       GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkH 292
                     n++++De+++PvPvCsCtG+++ CYkWGnGGWqSaCCttt+SvyPLP+++++r +R++grKmS++af+klL++L aeG+dl s p+DLkdhWAkH
  XP_027074875.1 196 NQINFDETSMPVPVCSCTGTPQPCYKWGNGGWQSACCTTTMSVYPLPQVSNKRYTRVGGRKMSGSAFNKLLNRLVAEGHDLySAPLDLKDHWAKH 290
                     ********************************************************************************8799*********** PP

       GAGA_bind 293 Gtnkfvtir 301
                     Gtn++ t++
  XP_027074875.1 291 GTNRYSTLK 299
                     *****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MDHNHLSIKT YMAITAERDA AIRERNMALE ERKRAFSERD MAMLQRDAAI AERNSAIQER  60
DEAIAALQIR DCSVNNMLSD SAEDGVADGT EDMHYQHMHH AMVNAAFSPR DILTSETFNS  120
TQVASETAKA TKVRQPKEGK MTKSVKSPRS PKRRAEGMIK PLTPASSNGW NAGHDLKREE  180
ELEGHLGTWK DNIGLNQINF DETSMPVPVC SCTGTPQPCY KWGNGGWQSA CCTTTMSVYP  240
LPQVSNKRYT RVGGRKMSGS AFNKLLNRLV AEGHDLYSAP LDLKDHWAKH GTNRYSTLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.26e-87BBR-BPC family protein