PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074668.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 410aa MW: 45076.2 Da PI: 10.545

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.2	1.4e-42	101	246	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec....eaesssssasnsssg. 88 ++k+drhski+T++g+RdRRvRls+++a++fF Lqd LG+dk+s+t++WLl+++k+aikel + + +++ +c +++ ++++a++++++ XP_027074668.1 101 PAKRDRHSKICTAQGPRDRRVRLSMDIARKFFGLQDLLGYDKASQTLDWLLTKSKAAIKELLDMkdtDHDANARClcfwSEAGNVVAAGTNTKEd 195 689********************************************************9996553344455566663333333333222223 PP TCP 89 ......kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133 +++k ++ ++ k++k a ++l kesrakarararertrek +++ XP_027074668.1 196 eskktaSKRKRKKtNQAKNPKMVA-LSKLVKESRAKARARARERTREKISLR 246 444443233333313333333333.677788***************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MFSSGSEITH FAQLSPYLCP PSSTTSSSTS STLGLNGNNE AFLLLHHQDL LSHYLAVAPM 60 IETANTMTAP TSTKKTTTAS TTNPQISSAT PLHTRYRRKQ PAKRDRHSKI CTAQGPRDRR 120 VRLSMDIARK FFGLQDLLGY DKASQTLDWL LTKSKAAIKE LLDMKDTDHD ANARCLCFWS 180 EAGNVVAAGT NTKEDESKKT ASKRKRKKTN QAKNPKMVAL SKLVKESRAK ARARARERTR 240 EKISLRKLSI DQKSPDLIPL SPDHTKPAAW SQIGTCKTKD SSMLGTISSL KLNASIQEDD 300 GFFCFNPRAG AIGSEEISQD SPRIIRKPKP SSILGFQRNL ILSKEASPNF DSWSLVTNGN 360 WGISSSMTSS SLCAVTNTSS TKVLQICGKP SEDKSNNNQV PCGRQIHRST

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MFSSGSEITH FAQLSPYLCP PSSTTSSSTS STLGLNGNNE AFLLLHHQDL LSHYLAVAPM  60
IETANTMTAP TSTKKTTTAS TTNPQISSAT PLHTRYRRKQ PAKRDRHSKI CTAQGPRDRR  120
VRLSMDIARK FFGLQDLLGY DKASQTLDWL LTKSKAAIKE LLDMKDTDHD ANARCLCFWS  180
EAGNVVAAGT NTKEDESKKT ASKRKRKKTN QAKNPKMVAL SKLVKESRAK ARARARERTR  240
EKISLRKLSI DQKSPDLIPL SPDHTKPAAW SQIGTCKTKD SSMLGTISSL KLNASIQEDD  300
GFFCFNPRAG AIGSEEISQD SPRIIRKPKP SSILGFQRNL ILSKEASPNF DSWSLVTNGN  360
WGISSSMTSS SLCAVTNTSS TKVLQICGKP SEDKSNNNQV PCGRQIHRST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	208	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	7e-27	TCP family protein