PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027074400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 252aa MW: 27806.2 Da PI: 7.9279 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.8 | 2e-31 | 50 | 103 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k rY+eClkNhA+ +GghavDGCgEf+++ g+egt +alkCaAC+CHRnFHR+e XP_027074400.1 50 KPRYRECLKNHAVGIGGHAVDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKEA 103 779*************************9.999********************96 PP | |||||||
2 | Homeobox | 16.3 | 1.7e-05 | 190 | 245 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+f++eq e + +l e k ++ ++e ++L ++lg++ ++ kvW +N + XP_027074400.1 190 KRFRTKFSQEQKEKMSDLAEklgwKIQKQDEEVVQQLCNELGIKRQVLKVWMHNNK 245 789************99999776678999*************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MEFEDQEENE GVEMELGPSY DSLGNSNSTR VSNKVPSPVE MSAEPTSQRK PRYRECLKNH 60 AVGIGGHAVD GCGEFLAAGA EGTLDALKCA ACNCHRNFHR KEALPGLPPH DPFHLYHHHY 120 HQQPPPPPPQ LLTYRTPSGY LHVSPPQQNR PLALPSISGG GEHEDMSNMN TSGGGRSGGG 180 GGGFVGSSKK RFRTKFSQEQ KEKMSDLAEK LGWKIQKQDE EVVQQLCNEL GIKRQVLKVW 240 MHNNKHTLGK KP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 182 | GGGRSGGGGG |
2 | 174 | 183 | GGGRSGGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-60 | ZF-HD family protein |