PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027074162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 261aa MW: 29520.4 Da PI: 9.0927 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40 | 6.4e-13 | 197 | 221 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C++ ++C+FaHg XP_027074162.1 197 KTELCNKWQETGSCPFAGNCRFAHG 221 9***********************8 PP | |||||||
2 | zf-CCCH | 21.6 | 3.8e-07 | 234 | 259 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_027074162.1 234 YKTEVCRMVLAGDICPYGHRCHFRHS 259 9**********55**********998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MTDEVVTPDR CHSDSSLILE YQQLYNRYAF CLANLRESIK EVQALGQDNE SLRLANADLV 60 HRLSLLSRAT IHNCLLSDFN RLRISGNDTP SPRLYSREAS PAPGPDVIQQ NRFQRRHLAE 120 RVSLPKSISI RSAGYLKFKP KSAGKYEAPT TQASSPNRVN SPPLPDSEKA RQRVYVAGGG 180 REEEASQFEV YNQGMSKTEL CNKWQETGSC PFAGNCRFAH GIMELRPVIR HPRYKTEVCR 240 MVLAGDICPY GHRCHFRHSL S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-64 | C3H family protein |