PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073951.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 238aa MW: 26575.8 Da PI: 7.3244

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.6e-05	31	63	1	34
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskap 34 +r + erE++ Rd++N f eLr+ + +a + XP_027073951.1 31 KRIHKAEREKKKRDHMNVLFVELRKAIEPAQ-LS 63 688899*********************9973.23 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MASETAIPDG DEGNAVHRHS SSKKKQGKPS KRIHKAEREK KKRDHMNVLF VELRKAIEPA 60 QLSSGKACIV NDTIRLLKDL LAQVYSLKKD NAALLSESHY VAVEKNELIE ENSALKSQVE 120 KLQSEITERT QSQSSVNLNI WPSQSPIAAS ELQEDSLRLP STDHQLLSSS VVAPIFVVPL 180 HHDSPIYHKG SQNDTAEDFQ CNASLSNVKK PRPRYPSPSD SWPSQILDEQ LNGREITQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	43	KKKQGKPSKRIHKAEREKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	1e-37	bHLH family protein