PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073933.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 506aa    MW: 57678.6 Da    PI: 5.6385
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3581.4e-1091255053374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + Lle A+a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y +l + ++++ + +++ +++  f+evsP+ +f+h++
  XP_027073933.1 125 DILLETARAIADKNSSRVQQLMWMLNELSSPYGDTDQKLASYFLQALFSRMTDSGERCYXTLVSASENTCSFESTRKMVLKFQEVSPWTTFGHVA 219
                     679***********************************************************8888876665555555556************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlva 183
                     +N aIleavege ++HiiD++ + ++QWp+Ll+aLa+R++++p+lR+T+v+ ++ g          ++ ++e+g+r++kfA+ +gvpf+fnvl++
  XP_027073933.1 220 CNGAILEAVEGEPKLHIIDISNTFCTQWPTLLEALATRSDETPHLRLTTVVVSK-GwrrrrrsrgVQKVMKEIGSRMEKFARLMGVPFKFNVLHH 313
                     **************************************************9954.45889999989999************************77 PP

            GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdslea 273
                       +l++l+l+eL++k++Eala+n+v +lh++     +l ++rd ++++++sl+P+++ vve+ead++ +    +F+++f e+l+++ + f+sl+ 
  XP_027073933.1 314 AgDLSELNLSELDIKEDEALAINCVGALHSVS----TLGNRRDFLISIFRSLQPRIMXVVEEEADLDVGfdgyDFVKGFQECLRWFRVYFESLDD 404
                     77*****************************8....8999999********************99865555569********************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..eesgslvlgWkdrp 366
                     ++p++s+er ++Er+  gr+iv++vac  ae++er+et+ +W++rl+++GF+pv++s+++ +++++llr++k dg+++   +es+ ++l Wkd+p
  XP_027073933.1 405 SFPKTSNERLMLERQ-AGRAIVDLVACPAAESIERRETATRWSHRLHASGFGPVSFSDEVCDDVRALLRRYK-DGWSMAqcNESAGIFLSWKDQP 497
                     ***************.********************************************************.776666446778888******* PP

            GRAS 367 LvsvSaWr 374
                     +v++SaWr
  XP_027073933.1 498 VVWASAWR 505
                     *******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MDTLFRLVSL QQPSDQSFNS SRTSSSSRSS RQNHHYNQHQ QEEEEECFNF FMDDEDFSSS  60
SSRPHYNPYQ QHQQQQTSST PTPTTTNTSS TPTTXPYESA DFSFSPARDI NQEFASSFSG  120
KWASDILLET ARAIADKNSS RVQQLMWMLN ELSSPYGDTD QKLASYFLQA LFSRMTDSGE  180
RCYXTLVSAS ENTCSFESTR KMVLKFQEVS PWTTFGHVAC NGAILEAVEG EPKLHIIDIS  240
NTFCTQWPTL LEALATRSDE TPHLRLTTVV VSKGWRRRRR SRGVQKVMKE IGSRMEKFAR  300
LMGVPFKFNV LHHAGDLSEL NLSELDIKED EALAINCVGA LHSVSTLGNR RDFLISIFRS  360
LQPRIMXVVE EEADLDVGFD GYDFVKGFQE CLRWFRVYFE SLDDSFPKTS NERLMLERQA  420
GRAIVDLVAC PAAESIERRE TATRWSHRLH ASGFGPVSFS DEVCDDVRAL LRRYKDGWSM  480
AQCNESAGIF LSWKDQPVVW ASAWRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein